1 HisKA#1
81-147 aa · 67 aa · 22.3% of protein
Raw token
HisKA:81:1.06e-16:147:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NSA51_RS02225
Histidine kinase, Classic
Flavonifractor plautii · GCF_024622525
ClassHKTypeClassicLength301 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024622525#NSA51_RS02225Stable P2CS identifier used across views.
GenomeGCF_024622525Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Flavonifractor
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length301 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 301 aa (58.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa301 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
193-300 aa · 108 aa · 35.9% of protein
Raw token
HATPase_c:193:8.6e-18:300:110:109- Raw architecture: HisKA:81:1.06e-16:147:67:64#HATPase_c:193:8.6e-18:300:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024622525::NZ_JANKAP010000002.1::G00022
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span186386-187291Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNSA51_02225RefSeq proteinWP_257590678.1
Context group ID
GCF_024622525::NZ_JANKAP010000002.1::G00022Context members
NSA51_RS02225
Partner locus tags
NSA51_RS02225
Partner old locus tags
NSA51_02225
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_257590678.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNSA51_RS02225Primary locus identifier stored in the genes table.
Old locus tagNSA51_02225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANKAP010000002.1Sequence record reported by the local genomic context database.
Genomic interval186 386-187 291 nt906 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span186 386-187 291 ntGCF_024622525::NZ_JANKAP010000002.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024622525::NZ_JANKAP010000002.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANKAP010000002.1All displayed genes belong to this local TCS context.
Neighborhood span186 386-187 291 nt906 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
186 386 nt187 291 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NSA51_RS02225GCF_024622525#NSA51_RS02225
HKClassicCurrent focus
186 386-187 291 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024622525#NSA51_RS02225The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2886366
Simplified PFAM architecture for HKOC_2886366
PFAM domain coverage: 169 / 301 aa (56.1%)
1 aa301 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[82-147] | HATPase_c[194-296]
- Domain count: 2
- Matched identifier: HKOC_2886366
- Positioned domains: HisKA 82-147 ; HATPase_c 194-296
Cluster members and taxonomy
Representative gene: GCF_024622525#NSA51_RS02225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 292 800 · GCF_024622525
AssemblyASM2462252v1 · Contighaploid
Genome composition3 715 834 bp · 61,5% GCFlavonifractor plautii
Signal transduction countsGenes 71 · HK 33 · RR 38CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFlavonifractor
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Flavonifractor
Related genes
Preview from the same derived genome key