1 Response_reg#1
4-117 aa · 114 aa · 32.1% of protein
Raw token
Response_reg:4:0.0000000363:117:122:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NSA51_RS00935
Response regulator, unclassified
Flavonifractor plautii · GCF_024622525
ClassRRTypeunclassifiedLength355 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024622525#NSA51_RS00935Stable P2CS identifier used across views.
GenomeGCF_024622525Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Flavonifractor
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 355 aa (42.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
307-343 aa · 37 aa · 10.4% of protein
Raw token
HTH_AraC:307:0.00000000701:343:37:42- Raw architecture: Response_reg:4:0.0000000363:117:122:111#HTH_AraC:307:0.00000000701:343:37:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024622525::NZ_JANKAP010000001.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span178710-179777Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNSA51_00935RefSeq proteinWP_257590574.1
Context group ID
GCF_024622525::NZ_JANKAP010000001.1::G00018Context members
NSA51_RS00935
Partner locus tags
NSA51_RS00935
Partner old locus tags
NSA51_00935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_257590574.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNSA51_RS00935Primary locus identifier stored in the genes table.
Old locus tagNSA51_00935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANKAP010000001.1Sequence record reported by the local genomic context database.
Genomic interval178 710-179 777 nt1 068 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span178 710-179 777 ntGCF_024622525::NZ_JANKAP010000001.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024622525::NZ_JANKAP010000001.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANKAP010000001.1All displayed genes belong to this local TCS context.
Neighborhood span178 710-179 777 nt1 068 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
178 710 nt179 777 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NSA51_RS00935GCF_024622525#NSA51_RS00935
RRunclassifiedCurrent focus
178 710-179 777 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024622525#NSA51_RS00935The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0470120
Simplified PFAM architecture for RROC_0470120
PFAM domain coverage: 179 / 355 aa (50.4%)
1 aa355 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[17-117] | HTH_18[266-343]
- Domain count: 2
- Matched identifier: RROC_0470120
- Positioned domains: Response_reg 17-117 ; HTH_18 266-343
Cluster members and taxonomy
Representative gene: GCF_024622525#NSA51_RS00935
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 292 800 · GCF_024622525
AssemblyASM2462252v1 · Contighaploid
Genome composition3 715 834 bp · 61,5% GCFlavonifractor plautii
Signal transduction countsGenes 71 · HK 33 · RR 38CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFlavonifractor
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Flavonifractor
Related genes
Preview from the same derived genome key