1 Response_reg#1
8-115 aa · 108 aa · 55.7% of protein
Raw token
Response_reg:8:1.08e-28:115:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NSA51_RS17295
Response regulator, AmiR_NasR family
Flavonifractor plautii · GCF_024622525
ClassRRTypeAmiR_NasRLength194 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024622525#NSA51_RS17295Stable P2CS identifier used across views.
GenomeGCF_024622525Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Flavonifractor
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length194 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 194 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa194 aa
Domain-by-domain annotation2 items
2 ANTAR#2
141-189 aa · 49 aa · 25.3% of protein
Raw token
ANTAR:141:7.23e-16:189:49:49- Raw architecture: Response_reg:8:1.08e-28:115:108:111#ANTAR:141:7.23e-16:189:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024622525::NZ_JANKAP010000038.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6915-8927Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNSA51_17295RefSeq proteinWP_007493534.1
Context group ID
GCF_024622525::NZ_JANKAP010000038.1::G00028Context members
NSA51_RS17290NSA51_RS17295
Partner locus tags
NSA51_RS17290NSA51_RS17295
Partner old locus tags
NSA51_17290NSA51_17295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007493534.1Primary protein accession used for annex mappings.
UniProt accessionA0A096DAP6Primary UniProt accession resolved in the annex database.
UniProt IDA0A096DAP6_FLAPLDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNSA51_RS17295Primary locus identifier stored in the genes table.
Old locus tagNSA51_17295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANKAP010000038.1Sequence record reported by the local genomic context database.
Genomic interval8 343-8 927 nt585 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span6 915-8 927 ntGCF_024622525::NZ_JANKAP010000038.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024622525::NZ_JANKAP010000038.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANKAP010000038.1All displayed genes belong to this local TCS context.
Neighborhood span6 915-8 927 nt2 013 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 915 nt8 927 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NSA51_RS17290GCF_024622525#NSA51_RS17290
HKClassic
6 915-8 339 nt · Reverse (-)
NSA51_RS17295GCF_024622525#NSA51_RS17295
RRAmiR_NasRCurrent focus
8 343-8 927 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000239295#HMPREF0372_RS13550Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2160831
Simplified PFAM architecture for RROC_2160831
PFAM domain coverage: 163 / 194 aa (84.0%)
1 aa194 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[8-117] | ANTAR[137-189]
- Domain count: 2
- Matched identifier: RROC_2160831
- Positioned domains: Response_reg 8-117 ; Response_reg 8-117 ; ANTAR 137-189 ; ANTAR 137-189
Cluster members and taxonomy
Representative gene: GCF_000239295#HMPREF0372_RS13550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 292 800 · GCF_024622525
AssemblyASM2462252v1 · Contighaploid
Genome composition3 715 834 bp · 61,5% GCFlavonifractor plautii
Signal transduction countsGenes 71 · HK 33 · RR 38CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFlavonifractor
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Flavonifractor
Related genes
Preview from the same derived genome key