1 Response_reg#1
7-120 aa · 114 aa · 50.7% of protein
Raw token
Response_reg:7:6.04e-22:120:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NSA51_RS10955
Response regulator NarL family
Flavonifractor plautii · GCF_024622525
ClassRRTypeNarLLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024622525#NSA51_RS10955Stable P2CS identifier used across views.
GenomeGCF_024622525Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Flavonifractor
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage170 / 225 aa (75.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
159-214 aa · 56 aa · 24.9% of protein
Raw token
HTH_LUXR:159:0.000000261:214:56:58- Raw architecture: Response_reg:7:6.04e-22:120:114:111#HTH_LUXR:159:0.000000261:214:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024622525::NZ_JANKAP010000014.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span84651-85328Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNSA51_10955RefSeq proteinWP_007495189.1
Context group ID
GCF_024622525::NZ_JANKAP010000014.1::G00008Context members
NSA51_RS10955
Partner locus tags
NSA51_RS10955
Partner old locus tags
NSA51_10955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007495189.1Primary protein accession used for annex mappings.
UniProt accessionA0A096D8T2Primary UniProt accession resolved in the annex database.
UniProt IDA0A096D8T2_FLAPLDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNSA51_RS10955Primary locus identifier stored in the genes table.
Old locus tagNSA51_10955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANKAP010000014.1Sequence record reported by the local genomic context database.
Genomic interval84 651-85 328 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span84 651-85 328 ntGCF_024622525::NZ_JANKAP010000014.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024622525::NZ_JANKAP010000014.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANKAP010000014.1All displayed genes belong to this local TCS context.
Neighborhood span84 651-85 328 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 651 nt85 328 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NSA51_RS10955GCF_024622525#NSA51_RS10955
RRNarLCurrent focus
84 651-85 328 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000239295#HMPREF0372_RS16965Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1464131
Simplified PFAM architecture for RROC_1464131
PFAM domain coverage: 114 / 225 aa (50.7%)
1 aa225 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[7-120]
- Domain count: 1
- Matched identifier: RROC_1464131
- Positioned domains: Response_reg 7-120 ; Response_reg 7-120
Cluster members and taxonomy
Representative gene: GCF_000239295#HMPREF0372_RS16965
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 292 800 · GCF_024622525
AssemblyASM2462252v1 · Contighaploid
Genome composition3 715 834 bp · 61,5% GCFlavonifractor plautii
Signal transduction countsGenes 71 · HK 33 · RR 38CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFlavonifractor
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Flavonifractor
Related genes
Preview from the same derived genome key