1 Response_reg#1
6-115 aa · 110 aa · 45.3% of protein
Raw token
Response_reg:6:1.53e-33:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NSA51_RS10635
Response regulator OmpR family
Flavonifractor plautii · GCF_024622525
ClassRRTypeOmpRLength243 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024622525#NSA51_RS10635Stable P2CS identifier used across views.
GenomeGCF_024622525Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Flavonifractor
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 243 aa (77.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 31.7% of protein
Raw token
Trans_reg_C:153:4.42e-29:229:77:77- Raw architecture: Response_reg:6:1.53e-33:115:111:111#Trans_reg_C:153:4.42e-29:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024622525::NZ_JANKAP010000014.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9865-13276Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNSA51_10635RefSeq proteinWP_021631971.1
Context group ID
GCF_024622525::NZ_JANKAP010000014.1::G00006Context members
NSA51_RS10630NSA51_RS10635
Partner locus tags
NSA51_RS10630NSA51_RS10635
Partner old locus tags
NSA51_10630NSA51_10635
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021631971.1Primary protein accession used for annex mappings.
UniProt accessionA0A096B4N6Primary UniProt accession resolved in the annex database.
UniProt IDA0A096B4N6_FLAPLDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNSA51_RS10635Primary locus identifier stored in the genes table.
Old locus tagNSA51_10635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANKAP010000014.1Sequence record reported by the local genomic context database.
Genomic interval12 545-13 276 nt732 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 865-13 276 ntGCF_024622525::NZ_JANKAP010000014.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024622525::NZ_JANKAP010000014.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANKAP010000014.1All displayed genes belong to this local TCS context.
Neighborhood span9 865-13 276 nt3 412 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 865 nt13 276 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NSA51_RS10630GCF_024622525#NSA51_RS10630
HKClassic
9 865-12 573 nt · Forward (+)
NSA51_RS10635GCF_024622525#NSA51_RS10635
RROmpRCurrent focus
12 545-13 276 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000760655#HMPREF9460_RS15615Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0826352
Simplified PFAM architecture for RROC_0826352
PFAM domain coverage: 186 / 243 aa (76.5%)
1 aa243 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[153-229]
- Domain count: 2
- Matched identifier: RROC_0826352
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 153-229 ; Trans_reg_C 153-229
Cluster members and taxonomy
Representative gene: GCF_000760655#HMPREF9460_RS15615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 292 800 · GCF_024622525
AssemblyASM2462252v1 · Contighaploid
Genome composition3 715 834 bp · 61,5% GCFlavonifractor plautii
Signal transduction countsGenes 71 · HK 33 · RR 38CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFlavonifractor
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Flavonifractor
Related genes
Preview from the same derived genome key