1 Response_reg#1
4-116 aa · 113 aa · 47.3% of protein
Raw token
Response_reg:4:0.0000011:116:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NSA51_RS09530
Response regulator LytTR family
Flavonifractor plautii · GCF_024622525
ClassRRTypeLytTRLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024622525#NSA51_RS09530Stable P2CS identifier used across views.
GenomeGCF_024622525Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Flavonifractor
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 239 aa (83.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-229 aa · 87 aa · 36.4% of protein
Raw token
LytTR:143:8.19e-23:229:92:98- Raw architecture: Response_reg:4:0.0000011:116:115:111#LytTR:143:8.19e-23:229:92:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024622525::NZ_JANKAP010000011.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span88920-89639Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNSA51_09530RefSeq proteinWP_021630047.1
Context group ID
GCF_024622525::NZ_JANKAP010000011.1::G00003Context members
NSA51_RS09530
Partner locus tags
NSA51_RS09530
Partner old locus tags
NSA51_09530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021630047.1Primary protein accession used for annex mappings.
UniProt accessionA0A174U215Primary UniProt accession resolved in the annex database.
UniProt IDA0A174U215_FLAPLDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNSA51_RS09530Primary locus identifier stored in the genes table.
Old locus tagNSA51_09530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANKAP010000011.1Sequence record reported by the local genomic context database.
Genomic interval88 920-89 639 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span88 920-89 639 ntGCF_024622525::NZ_JANKAP010000011.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024622525::NZ_JANKAP010000011.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANKAP010000011.1All displayed genes belong to this local TCS context.
Neighborhood span88 920-89 639 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 920 nt89 639 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NSA51_RS09530GCF_024622525#NSA51_RS09530
RRLytTRCurrent focus
88 920-89 639 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406055#ARA79_RS13065Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0908918
Simplified PFAM architecture for RROC_0908918
PFAM domain coverage: 199 / 239 aa (83.3%)
1 aa239 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-117] | LytTR[143-227]
- Domain count: 2
- Matched identifier: RROC_0908918
- Positioned domains: Response_reg 4-117 ; Response_reg 4-117 ; LytTR 143-227 ; LytTR 143-227
Cluster members and taxonomy
Representative gene: GCF_001406055#ARA79_RS13065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 292 800 · GCF_024622525
AssemblyASM2462252v1 · Contighaploid
Genome composition3 715 834 bp · 61,5% GCFlavonifractor plautii
Signal transduction countsGenes 71 · HK 33 · RR 38CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFlavonifractor
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Flavonifractor
Related genes
Preview from the same derived genome key