1 Response_reg#1
6-116 aa · 111 aa · 91.7% of protein
Raw token
Response_reg:6:9.74e-28:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NSA51_RS08490
Response regulator, CheY family
Flavonifractor plautii · GCF_024622525
ClassRRTypeCheYLength121 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024622525#NSA51_RS08490Stable P2CS identifier used across views.
GenomeGCF_024622525Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Flavonifractor
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length121 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 121 aa (91.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa121 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:9.74e-28:116:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024622525::NZ_JANKAP010000009.1::G00043
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span117131-117496Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNSA51_08490RefSeq proteinWP_196011694.1
Context group ID
GCF_024622525::NZ_JANKAP010000009.1::G00043Context members
NSA51_RS08490
Partner locus tags
NSA51_RS08490
Partner old locus tags
NSA51_08490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_196011694.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNSA51_RS08490Primary locus identifier stored in the genes table.
Old locus tagNSA51_08490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANKAP010000009.1Sequence record reported by the local genomic context database.
Genomic interval117 131-117 496 nt366 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span117 131-117 496 ntGCF_024622525::NZ_JANKAP010000009.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024622525::NZ_JANKAP010000009.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANKAP010000009.1All displayed genes belong to this local TCS context.
Neighborhood span117 131-117 496 nt366 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
117 131 nt117 496 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NSA51_RS08490GCF_024622525#NSA51_RS08490
RRCheYCurrent focus
117 131-117 496 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015669185#I4W25_RS10785Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2425028
Simplified PFAM architecture for RROC_2425028
PFAM domain coverage: 110 / 121 aa (90.9%)
1 aa121 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[6-115]
- Domain count: 1
- Matched identifier: RROC_2425028
- Positioned domains: Response_reg 6-115
Cluster members and taxonomy
Representative gene: GCF_015669185#I4W25_RS10785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 292 800 · GCF_024622525
AssemblyASM2462252v1 · Contighaploid
Genome composition3 715 834 bp · 61,5% GCFlavonifractor plautii
Signal transduction countsGenes 71 · HK 33 · RR 38CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFlavonifractor
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Flavonifractor
Related genes
Preview from the same derived genome key