1 Response_reg#1
3-113 aa · 111 aa · 49.3% of protein
Raw token
Response_reg:3:1.99e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NSA51_RS05865
Response regulator OmpR family
Flavonifractor plautii · GCF_024622525
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024622525#NSA51_RS05865Stable P2CS identifier used across views.
GenomeGCF_024622525Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Flavonifractor
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 225 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-217 aa · 71 aa · 31.6% of protein
Raw token
Trans_reg_C:147:2.15e-19:217:72:77- Raw architecture: Response_reg:3:1.99e-36:113:111:111#Trans_reg_C:147:2.15e-19:217:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024622525::NZ_JANKAP010000006.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51143-53027Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNSA51_05865RefSeq proteinWP_257590900.1
Context group ID
GCF_024622525::NZ_JANKAP010000006.1::G00042Context members
NSA51_RS05860NSA51_RS05865
Partner locus tags
NSA51_RS05860NSA51_RS05865
Partner old locus tags
NSA51_05860NSA51_05865
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_257590900.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNSA51_RS05865Primary locus identifier stored in the genes table.
Old locus tagNSA51_05865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANKAP010000006.1Sequence record reported by the local genomic context database.
Genomic interval52 350-53 027 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span51 143-53 027 ntGCF_024622525::NZ_JANKAP010000006.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024622525::NZ_JANKAP010000006.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANKAP010000006.1All displayed genes belong to this local TCS context.
Neighborhood span51 143-53 027 nt1 885 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 143 nt53 027 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NSA51_RS05860GCF_024622525#NSA51_RS05860
HKClassic
51 143-52 357 nt · Reverse (-)
NSA51_RS05865GCF_024622525#NSA51_RS05865
RROmpRCurrent focus
52 350-53 027 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_024622525#NSA51_RS05865The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1499809
Simplified PFAM architecture for RROC_1499809
PFAM domain coverage: 184 / 225 aa (81.8%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[146-219]
- Domain count: 2
- Matched identifier: RROC_1499809
- Positioned domains: Response_reg 3-112 ; Trans_reg_C 146-219
Cluster members and taxonomy
Representative gene: GCF_024622525#NSA51_RS05865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 292 800 · GCF_024622525
AssemblyASM2462252v1 · Contighaploid
Genome composition3 715 834 bp · 61,5% GCFlavonifractor plautii
Signal transduction countsGenes 71 · HK 33 · RR 38CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFlavonifractor
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Flavonifractor
Related genes
Preview from the same derived genome key