1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:6.64e-31:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NSA51_RS04895
Response regulator OmpR family
Flavonifractor plautii · GCF_024622525
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024622525#NSA51_RS04895Stable P2CS identifier used across views.
GenomeGCF_024622525Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Flavonifractor
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 223 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-217 aa · 66 aa · 29.6% of protein
Raw token
Trans_reg_C:152:1.42e-29:217:71:77- Raw architecture: Response_reg:4:6.64e-31:113:111:111#Trans_reg_C:152:1.42e-29:217:71:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024622525::NZ_JANKAP010000005.1::G00039
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span65911-68047Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNSA51_04895RefSeq proteinWP_021630074.1
Context group ID
GCF_024622525::NZ_JANKAP010000005.1::G00039Context members
NSA51_RS04895NSA51_RS18390
Partner locus tags
NSA51_RS04895NSA51_RS18390
Partner old locus tags
NSA51_04895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021630074.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP3PPP7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP3PPP7_FLAPLDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNSA51_RS04895Primary locus identifier stored in the genes table.
Old locus tagNSA51_04895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANKAP010000005.1Sequence record reported by the local genomic context database.
Genomic interval65 911-66 582 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span65 911-68 047 ntGCF_024622525::NZ_JANKAP010000005.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024622525::NZ_JANKAP010000005.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANKAP010000005.1All displayed genes belong to this local TCS context.
Neighborhood span65 911-68 047 nt2 137 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
65 911 nt68 047 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NSA51_RS04895GCF_024622525#NSA51_RS04895
RROmpRCurrent focus
65 911-66 582 nt · Forward (+)
NSA51_RS18390GCF_024622525#NSA51_RS18390
HKClassic
66 560-68 047 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000760655#HMPREF9460_RS04435Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1591573
Simplified PFAM architecture for RROC_1591573
PFAM domain coverage: 175 / 223 aa (78.5%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[151-217]
- Domain count: 2
- Matched identifier: RROC_1591573
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 151-217 ; Trans_reg_C 151-217
Cluster members and taxonomy
Representative gene: GCF_000760655#HMPREF9460_RS04435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 292 800 · GCF_024622525
AssemblyASM2462252v1 · Contighaploid
Genome composition3 715 834 bp · 61,5% GCFlavonifractor plautii
Signal transduction countsGenes 71 · HK 33 · RR 38CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFlavonifractor
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Flavonifractor
Related genes
Preview from the same derived genome key