1 Response_reg#1
5-114 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:5:4.99e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NSA51_RS04455
Response regulator OmpR family
Flavonifractor plautii · GCF_024622525
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024622525#NSA51_RS04455Stable P2CS identifier used across views.
GenomeGCF_024622525Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Flavonifractor
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 233 aa (80.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-231 aa · 78 aa · 33.5% of protein
Raw token
Trans_reg_C:154:2.24e-29:231:78:77- Raw architecture: Response_reg:5:4.99e-35:114:111:111#Trans_reg_C:154:2.24e-29:231:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024622525::NZ_JANKAP010000004.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span187999-189865Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNSA51_04455RefSeq proteinWP_009256776.1
Context group ID
GCF_024622525::NZ_JANKAP010000004.1::G00037Context members
NSA51_RS04455NSA51_RS04460
Partner locus tags
NSA51_RS04455NSA51_RS04460
Partner old locus tags
NSA51_04455NSA51_04460
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009256776.1Primary protein accession used for annex mappings.
UniProt accessionA0A096DF26Primary UniProt accession resolved in the annex database.
UniProt IDA0A096DF26_FLAPLDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNSA51_RS04455Primary locus identifier stored in the genes table.
Old locus tagNSA51_04455Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANKAP010000004.1Sequence record reported by the local genomic context database.
Genomic interval187 999-188 700 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span187 999-189 865 ntGCF_024622525::NZ_JANKAP010000004.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024622525::NZ_JANKAP010000004.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANKAP010000004.1All displayed genes belong to this local TCS context.
Neighborhood span187 999-189 865 nt1 867 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
187 999 nt189 865 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NSA51_RS04455GCF_024622525#NSA51_RS04455
RROmpRCurrent focus
187 999-188 700 nt · Forward (+)
NSA51_RS04460GCF_024622525#NSA51_RS04460
HKClassic
188 633-189 865 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000239295#HMPREF0372_RS17140Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1081368
Simplified PFAM architecture for RROC_1081368
PFAM domain coverage: 187 / 233 aa (80.3%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_1081368
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 154-230 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_000239295#HMPREF0372_RS17140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 292 800 · GCF_024622525
AssemblyASM2462252v1 · Contighaploid
Genome composition3 715 834 bp · 61,5% GCFlavonifractor plautii
Signal transduction countsGenes 71 · HK 33 · RR 38CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFlavonifractor
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Flavonifractor
Related genes
Preview from the same derived genome key