1 Response_reg#1
5-112 aa · 108 aa · 48.2% of protein
Raw token
Response_reg:5:1.62e-27:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NSA51_RS03340
Response regulator OmpR family
Flavonifractor plautii · GCF_024622525
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_024622525#NSA51_RS03340Stable P2CS identifier used across views.
GenomeGCF_024622525Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Flavonifractor
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 224 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-214 aa · 71 aa · 31.7% of protein
Raw token
Trans_reg_C:144:1.06e-25:214:76:77- Raw architecture: Response_reg:5:1.62e-27:112:109:111#Trans_reg_C:144:1.06e-25:214:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_024622525::NZ_JANKAP010000003.1::G00033
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span188385-189059Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNSA51_03340RefSeq proteinWP_007491624.1
Context group ID
GCF_024622525::NZ_JANKAP010000003.1::G00033Context members
NSA51_RS03340
Partner locus tags
NSA51_RS03340
Partner old locus tags
NSA51_03340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007491624.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP3LTQ5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP3LTQ5_FLAPLDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNSA51_RS03340Primary locus identifier stored in the genes table.
Old locus tagNSA51_03340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANKAP010000003.1Sequence record reported by the local genomic context database.
Genomic interval188 385-189 059 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span188 385-189 059 ntGCF_024622525::NZ_JANKAP010000003.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024622525::NZ_JANKAP010000003.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANKAP010000003.1All displayed genes belong to this local TCS context.
Neighborhood span188 385-189 059 nt675 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
188 385 nt189 059 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NSA51_RS03340GCF_024622525#NSA51_RS03340
RROmpRCurrent focus
188 385-189 059 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000239295#HMPREF0372_RS09715Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1529954
Simplified PFAM architecture for RROC_1529954
PFAM domain coverage: 180 / 224 aa (80.4%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[144-214]
- Domain count: 2
- Matched identifier: RROC_1529954
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 144-214 ; Trans_reg_C 144-214
Cluster members and taxonomy
Representative gene: GCF_000239295#HMPREF0372_RS09715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 292 800 · GCF_024622525
AssemblyASM2462252v1 · Contighaploid
Genome composition3 715 834 bp · 61,5% GCFlavonifractor plautii
Signal transduction countsGenes 71 · HK 33 · RR 38CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFlavonifractor
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Flavonifractor
Related genes
Preview from the same derived genome key