1 Response_reg#1
5-113 aa · 109 aa · 47.4% of protein
Raw token
Response_reg:5:4.54e-37:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NSA51_RS02505
Response regulator OmpR family
Flavonifractor plautii · GCF_024622525
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_024622525#NSA51_RS02505Stable P2CS identifier used across views.
GenomeGCF_024622525Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Flavonifractor
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 230 aa (80.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-225 aa · 76 aa · 33.0% of protein
Raw token
Trans_reg_C:150:1.61e-32:225:77:77- Raw architecture: Response_reg:5:4.54e-37:113:110:111#Trans_reg_C:150:1.61e-32:225:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_024622525::NZ_JANKAP010000003.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6883-9226Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNSA51_02505RefSeq proteinWP_007491935.1
Context group ID
GCF_024622525::NZ_JANKAP010000003.1::G00029Context members
NSA51_RS02505NSA51_RS02510
Partner locus tags
NSA51_RS02505NSA51_RS02510
Partner old locus tags
NSA51_02505NSA51_02510
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_007491935.1Primary protein accession used for annex mappings.
UniProt accessionA0A096CPL6Primary UniProt accession resolved in the annex database.
UniProt IDA0A096CPL6_FLAPLDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNSA51_RS02505Primary locus identifier stored in the genes table.
Old locus tagNSA51_02505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANKAP010000003.1Sequence record reported by the local genomic context database.
Genomic interval6 883-7 575 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 883-9 226 ntGCF_024622525::NZ_JANKAP010000003.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_024622525::NZ_JANKAP010000003.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANKAP010000003.1All displayed genes belong to this local TCS context.
Neighborhood span6 883-9 226 nt2 344 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 883 nt9 226 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NSA51_RS02505GCF_024622525#NSA51_RS02505
RROmpRCurrent focus
6 883-7 575 nt · Forward (+)
NSA51_RS02510GCF_024622525#NSA51_RS02510
HKClassic
7 775-9 226 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000239295#HMPREF0372_RS10310Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200835
Simplified PFAM architecture for RROC_1200835
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-225]
- Domain count: 2
- Matched identifier: RROC_1200835
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-225 ; Trans_reg_C 150-225
Cluster members and taxonomy
Representative gene: GCF_000239295#HMPREF0372_RS10310
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 292 800 · GCF_024622525
AssemblyASM2462252v1 · Contighaploid
Genome composition3 715 834 bp · 61,5% GCFlavonifractor plautii
Signal transduction countsGenes 71 · HK 33 · RR 38CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFlavonifractor
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Flavonifractor
Related genes
Preview from the same derived genome key