1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:8.32e-22:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NB459_RS16615
Response regulator OmpR family
Clostridioides difficile · GCF_023656905
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_023656905#NB459_RS16615Stable P2CS identifier used across views.
GenomeGCF_023656905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 226 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:150:2.75e-22:223:75:77- Raw architecture: Response_reg:5:8.32e-22:114:111:111#Trans_reg_C:150:2.75e-22:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_023656905::NZ_JAMOJV010000001.1::G00054
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span3628150-3633874Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNB459_16635RefSeq proteinWP_102814983.1
Context group ID
GCF_023656905::NZ_JAMOJV010000001.1::G00054Context members
NB459_RS16605NB459_RS16610NB459_RS16615NB459_RS16620NB459_RS16625
Partner locus tags
NB459_RS16605NB459_RS16610NB459_RS16615NB459_RS16620NB459_RS16625
Partner old locus tags
NB459_16625NB459_16630NB459_16635NB459_16640NB459_16645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_102814983.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNB459_RS16615Primary locus identifier stored in the genes table.
Old locus tagNB459_16635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAMOJV010000001.1Sequence record reported by the local genomic context database.
Genomic interval3 630 380-3 631 060 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 628 150-3 633 874 ntGCF_023656905::NZ_JAMOJV010000001.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023656905::NZ_JAMOJV010000001.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAMOJV010000001.1All displayed genes belong to this local TCS context.
Neighborhood span3 628 150-3 633 874 nt5 725 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 628 150 nt3 633 874 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
NB459_RS16605GCF_023656905#NB459_RS16605
HKClassic
3 628 150-3 629 265 nt · Reverse (-)
NB459_RS16610GCF_023656905#NB459_RS16610
RROmpR
3 629 301-3 629 999 nt · Reverse (-)
NB459_RS16615GCF_023656905#NB459_RS16615
RROmpRCurrent focus
3 630 380-3 631 060 nt · Reverse (-)
NB459_RS16620GCF_023656905#NB459_RS16620
HKClassic
3 631 110-3 633 125 nt · Reverse (-)
NB459_RS16625GCF_023656905#NB459_RS16625
RROmpR
3 633 197-3 633 874 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002891605#AMR89_RS10905Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1419337
Simplified PFAM architecture for RROC_1419337
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1419337
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_002891605#AMR89_RS10905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_023656905
AssemblyASM2365690v1 · Scaffoldhaploid
Genome composition4 229 501 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key