1 Response_reg#1
4-112 aa · 109 aa · 47.4% of protein
Raw token
Response_reg:4:5.96e-33:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NB459_RS02620
Response regulator OmpR family
Clostridioides difficile · GCF_023656905
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_023656905#NB459_RS02620Stable P2CS identifier used across views.
GenomeGCF_023656905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 230 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:151:3.54e-28:227:77:77- Raw architecture: Response_reg:4:5.96e-33:112:111:111#Trans_reg_C:151:3.54e-28:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_023656905::NZ_JAMOJV010000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span502628-504763Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNB459_02620RefSeq proteinWP_167650414.1
Context group ID
GCF_023656905::NZ_JAMOJV010000001.1::G00005Context members
NB459_RS02620NB459_RS02625
Partner locus tags
NB459_RS02620NB459_RS02625
Partner old locus tags
NB459_02620NB459_02625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_167650414.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNB459_RS02620Primary locus identifier stored in the genes table.
Old locus tagNB459_02620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAMOJV010000001.1Sequence record reported by the local genomic context database.
Genomic interval502 628-503 320 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span502 628-504 763 ntGCF_023656905::NZ_JAMOJV010000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023656905::NZ_JAMOJV010000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAMOJV010000001.1All displayed genes belong to this local TCS context.
Neighborhood span502 628-504 763 nt2 136 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
502 628 nt504 763 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NB459_RS02620GCF_023656905#NB459_RS02620
RROmpRCurrent focus
502 628-503 320 nt · Forward (+)
NB459_RS02625GCF_023656905#NB459_RS02625
HKClassic
503 441-504 763 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012276945#GSQ50_RS12980Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1216756
Simplified PFAM architecture for RROC_1216756
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1216756
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_012276945#GSQ50_RS12980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_023656905
AssemblyASM2365690v1 · Scaffoldhaploid
Genome composition4 229 501 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key