1 Response_reg#1
11-121 aa · 111 aa · 45.5% of protein
Raw token
Response_reg:11:4.85e-28:121:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NB459_RS00280
Response regulator OmpR family
Clostridioides difficile · GCF_023656905
ClassRRTypeOmpRLength244 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_023656905#NB459_RS00280Stable P2CS identifier used across views.
GenomeGCF_023656905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length244 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 244 aa (77.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa244 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
162-238 aa · 77 aa · 31.6% of protein
Raw token
Trans_reg_C:162:6.12e-27:238:77:77- Raw architecture: Response_reg:11:4.85e-28:121:112:111#Trans_reg_C:162:6.12e-27:238:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_023656905::NZ_JAMOJV010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30891-32727Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNB459_00280RefSeq proteinWP_168347103.1
Context group ID
GCF_023656905::NZ_JAMOJV010000001.1::G00001Context members
NB459_RS00275NB459_RS00280
Partner locus tags
NB459_RS00275NB459_RS00280
Partner old locus tags
NB459_00275NB459_00280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_168347103.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNB459_RS00280Primary locus identifier stored in the genes table.
Old locus tagNB459_00280Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAMOJV010000001.1Sequence record reported by the local genomic context database.
Genomic interval31 993-32 727 nt735 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 891-32 727 ntGCF_023656905::NZ_JAMOJV010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_023656905::NZ_JAMOJV010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAMOJV010000001.1All displayed genes belong to this local TCS context.
Neighborhood span30 891-32 727 nt1 837 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 891 nt32 727 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
NB459_RS00275GCF_023656905#NB459_RS00275
HKClassic
30 891-31 988 nt · Reverse (-)
NB459_RS00280GCF_023656905#NB459_RS00280
RROmpRCurrent focus
31 993-32 727 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012276945#GSQ50_RS10475Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0812894
Simplified PFAM architecture for RROC_0812894
PFAM domain coverage: 188 / 244 aa (77.0%)
1 aa244 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[11-121] | Trans_reg_C[162-238]
- Domain count: 2
- Matched identifier: RROC_0812894
- Positioned domains: Response_reg 11-121 ; Trans_reg_C 162-238
Cluster members and taxonomy
Representative gene: GCF_012276945#GSQ50_RS10475
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_023656905
AssemblyASM2365690v1 · Scaffoldhaploid
Genome composition4 229 501 bp · 29,0% GCClostridioides difficile
Signal transduction countsGenes 102 · HK 48 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key