1 HisKA#1
370-436 aa · 67 aa · 8.9% of protein
Raw token
HisKA:370:3.71e-18:436:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D0D05_RS03080
Histidine kinase, Hybrid
Faecalibacterium prausnitzii · GCF_022750585
ClassHKTypeHybridLength755 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022750585#D0D05_RS03080Stable P2CS identifier used across views.
GenomeGCF_022750585Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length755 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage302 / 755 aa (40.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa755 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
482-599 aa · 118 aa · 15.6% of protein
Raw token
HATPase_c:482:2.19e-31:599:118:1093 Response_reg#3
628-744 aa · 117 aa · 15.5% of protein
Raw token
Response_reg:628:4.16e-27:744:117:111- Raw architecture: HisKA:370:3.71e-18:436:67:64#HATPase_c:482:2.19e-31:599:118:109#Response_reg:628:4.16e-27:744:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022750585::NZ_QVII01000002.1::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span216814-219081Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD0D05_03095RefSeq proteinWP_242914888.1
Context group ID
GCF_022750585::NZ_QVII01000002.1::G00005Context members
D0D05_RS03080
Partner locus tags
D0D05_RS03080
Partner old locus tags
D0D05_03095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242914888.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD0D05_RS03080Primary locus identifier stored in the genes table.
Old locus tagD0D05_03095Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVII01000002.1Sequence record reported by the local genomic context database.
Genomic interval216 814-219 081 nt2 268 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span216 814-219 081 ntGCF_022750585::NZ_QVII01000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022750585::NZ_QVII01000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVII01000002.1All displayed genes belong to this local TCS context.
Neighborhood span216 814-219 081 nt2 268 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
216 814 nt219 081 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D0D05_RS03080GCF_022750585#D0D05_RS03080
HKHybridCurrent focus
216 814-219 081 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022750585#D0D05_RS03080The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0657474
Simplified PFAM architecture for HKOC_0657474
PFAM domain coverage: 299 / 755 aa (39.6%)
1 aa755 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[370-436] | HATPase_c[482-597] | Response_reg[628-743]
- Domain count: 3
- Matched identifier: HKOC_0657474
- Positioned domains: HisKA 370-436 ; HATPase_c 482-597 ; Response_reg 628-743
Cluster members and taxonomy
Representative gene: GCF_022750585#D0D05_RS03080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_022750585
AssemblyASM2275058v1 · Contighaploid
Genome composition3 200 877 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 50 · HK 23 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key