1 Response_reg#1
3-113 aa · 111 aa · 39.5% of protein
Raw token
Response_reg:3:5.92e-22:113:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D0D05_RS03400
Response regulator, unclassified
Faecalibacterium prausnitzii · GCF_022750585
ClassRRTypeunclassifiedLength281 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022750585#D0D05_RS03400Stable P2CS identifier used across views.
GenomeGCF_022750585Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length281 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 281 aa (39.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa281 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:5.92e-22:113:117:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022750585::NZ_QVII01000002.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span289858-290703Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD0D05_03425RefSeq proteinWP_117930439.1
Context group ID
GCF_022750585::NZ_QVII01000002.1::G00007Context members
D0D05_RS03400
Partner locus tags
D0D05_RS03400
Partner old locus tags
D0D05_03425
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117930439.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD0D05_RS03400Primary locus identifier stored in the genes table.
Old locus tagD0D05_03425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVII01000002.1Sequence record reported by the local genomic context database.
Genomic interval289 858-290 703 nt846 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span289 858-290 703 ntGCF_022750585::NZ_QVII01000002.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022750585::NZ_QVII01000002.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVII01000002.1All displayed genes belong to this local TCS context.
Neighborhood span289 858-290 703 nt846 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
289 858 nt290 703 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D0D05_RS03400GCF_022750585#D0D05_RS03400
RRunclassifiedCurrent focus
289 858-290 703 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003465525#DWV51_RS03640Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0595730
Simplified PFAM architecture for RROC_0595730
PFAM domain coverage: 110 / 281 aa (39.1%)
1 aa281 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[3-112]
- Domain count: 1
- Matched identifier: RROC_0595730
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112
Cluster members and taxonomy
Representative gene: GCF_003465525#DWV51_RS03640
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_022750585
AssemblyASM2275058v1 · Contighaploid
Genome composition3 200 877 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 50 · HK 23 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key