1 HAMP#1
89-156 aa · 68 aa · 17.8% of protein
Raw token
HAMP:89:0.0000000000372:156:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D0C48_RS13745
Histidine kinase, Classic
Faecalibacterium prausnitzii · GCF_022750565
ClassHKTypeClassicLength382 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022750565#D0C48_RS13745Stable P2CS identifier used across views.
GenomeGCF_022750565Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length382 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 382 aa (63.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa382 aa
Domain-by-domain annotation3 items
2 HisKA#2
161-226 aa · 66 aa · 17.3% of protein
Raw token
HisKA:161:0.0000000000165:226:66:643 HATPase_c#3
273-380 aa · 108 aa · 28.3% of protein
Raw token
HATPase_c:273:1.83e-33:380:108:109- Raw architecture: HAMP:89:0.0000000000372:156:68:69#HisKA:161:0.0000000000165:226:66:64#HATPase_c:273:1.83e-33:380:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022750565::NZ_QVIH01000016.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35994-37816Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD0C48_13850RefSeq proteinWP_242914966.1
Context group ID
GCF_022750565::NZ_QVIH01000016.1::G00026Context members
D0C48_RS13740D0C48_RS13745
Partner locus tags
D0C48_RS13740D0C48_RS13745
Partner old locus tags
D0C48_13845D0C48_13850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242914966.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD0C48_RS13745Primary locus identifier stored in the genes table.
Old locus tagD0C48_13850Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVIH01000016.1Sequence record reported by the local genomic context database.
Genomic interval36 668-37 816 nt1 149 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 994-37 816 ntGCF_022750565::NZ_QVIH01000016.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022750565::NZ_QVIH01000016.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVIH01000016.1All displayed genes belong to this local TCS context.
Neighborhood span35 994-37 816 nt1 823 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 994 nt37 816 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D0C48_RS13740GCF_022750565#D0C48_RS13740
RROmpR
35 994-36 671 nt · Forward (+)
D0C48_RS13745GCF_022750565#D0C48_RS13745
HKClassicCurrent focus
36 668-37 816 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022750565#D0C48_RS13745The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2594554
Simplified PFAM architecture for HKOC_2594554
PFAM domain coverage: 227 / 382 aa (59.4%)
1 aa382 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[103-155] | HisKA[161-226] | HATPase_c[272-379]
- Domain count: 3
- Matched identifier: HKOC_2594554
- Positioned domains: HAMP 103-155 ; HisKA 161-226 ; HATPase_c 272-379
Cluster members and taxonomy
Representative gene: GCF_022750565#D0C48_RS13745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_022750565
AssemblyASM2275056v1 · Contighaploid
Genome composition3 243 905 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 50 · HK 23 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key