1 Response_reg#1
5-113 aa · 109 aa · 48.2% of protein
Raw token
Response_reg:5:1.39e-27:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D0C48_RS01030
Response regulator OmpR family
Faecalibacterium prausnitzii · GCF_022750565
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022750565#D0C48_RS01030Stable P2CS identifier used across views.
GenomeGCF_022750565Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 226 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-224 aa · 75 aa · 33.2% of protein
Raw token
Trans_reg_C:150:2.57e-31:224:75:77- Raw architecture: Response_reg:5:1.39e-27:113:110:111#Trans_reg_C:150:2.57e-31:224:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022750565::NZ_QVIH01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span219857-221584Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD0C48_01030RefSeq proteinWP_120020453.1
Context group ID
GCF_022750565::NZ_QVIH01000001.1::G00003Context members
D0C48_RS01025D0C48_RS01030
Partner locus tags
D0C48_RS01025D0C48_RS01030
Partner old locus tags
D0C48_01025D0C48_01030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_120020453.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD0C48_RS01030Primary locus identifier stored in the genes table.
Old locus tagD0C48_01030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVIH01000001.1Sequence record reported by the local genomic context database.
Genomic interval220 904-221 584 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span219 857-221 584 ntGCF_022750565::NZ_QVIH01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022750565::NZ_QVIH01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVIH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span219 857-221 584 nt1 728 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
219 857 nt221 584 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
D0C48_RS01025GCF_022750565#D0C48_RS01025
HKClassic
219 857-220 894 nt · Reverse (-)
D0C48_RS01030GCF_022750565#D0C48_RS01030
RROmpRCurrent focus
220 904-221 584 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003604105#DWV57_RS07860Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1421650
Simplified PFAM architecture for RROC_1421650
PFAM domain coverage: 182 / 226 aa (80.5%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1421650
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_003604105#DWV57_RS07860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_022750565
AssemblyASM2275056v1 · Contighaploid
Genome composition3 243 905 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 50 · HK 23 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key