1 Response_reg#1
4-121 aa · 118 aa · 50.0% of protein
Raw token
Response_reg:4:3.99e-21:121:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D0C48_RS02345
Response regulator LytTR family
Faecalibacterium prausnitzii · GCF_022750565
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022750565#D0C48_RS02345Stable P2CS identifier used across views.
GenomeGCF_022750565Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 236 aa (88.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-227 aa · 91 aa · 38.6% of protein
Raw token
LytTR:137:2.52e-20:227:97:98- Raw architecture: Response_reg:4:3.99e-21:121:121:111#LytTR:137:2.52e-20:227:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022750565::NZ_QVIH01000001.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span472752-473462Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD0C48_02355RefSeq proteinWP_223450551.1
Context group ID
GCF_022750565::NZ_QVIH01000001.1::G00006Context members
D0C48_RS02345
Partner locus tags
D0C48_RS02345
Partner old locus tags
D0C48_02355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_223450551.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD0C48_RS02345Primary locus identifier stored in the genes table.
Old locus tagD0C48_02355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVIH01000001.1Sequence record reported by the local genomic context database.
Genomic interval472 752-473 462 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span472 752-473 462 ntGCF_022750565::NZ_QVIH01000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022750565::NZ_QVIH01000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVIH01000001.1All displayed genes belong to this local TCS context.
Neighborhood span472 752-473 462 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
472 752 nt473 462 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D0C48_RS02345GCF_022750565#D0C48_RS02345
RRLytTRCurrent focus
472 752-473 462 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019969405#LC355_RS00510Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1002531
Simplified PFAM architecture for RROC_1002531
PFAM domain coverage: 194 / 236 aa (82.2%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[139-227]
- Domain count: 2
- Matched identifier: RROC_1002531
- Positioned domains: Response_reg 4-108 ; LytTR 139-227
Cluster members and taxonomy
Representative gene: GCF_019969405#LC355_RS00510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_022750565
AssemblyASM2275056v1 · Contighaploid
Genome composition3 243 905 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 50 · HK 23 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key