1 HisKA#1
370-436 aa · 67 aa · 8.9% of protein
Raw token
HisKA:370:3.82e-18:436:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
D0C48_RS10065
Histidine kinase, Hybrid
Faecalibacterium prausnitzii · GCF_022750565
ClassHKTypeHybridLength754 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022750565#D0C48_RS10065Stable P2CS identifier used across views.
GenomeGCF_022750565Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Faecalibacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length754 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage302 / 754 aa (40.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa754 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
482-599 aa · 118 aa · 15.6% of protein
Raw token
HATPase_c:482:2.27e-31:599:118:1093 Response_reg#3
628-744 aa · 117 aa · 15.5% of protein
Raw token
Response_reg:628:4.2e-27:744:117:111- Raw architecture: HisKA:370:3.82e-18:436:67:64#HATPase_c:482:2.27e-31:599:118:109#Response_reg:628:4.2e-27:744:117:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022750565::NZ_QVIH01000007.1::G00018
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span113284-115548Genomic interval covered by the local TCS group.
Identifiers
Old locus tagD0C48_10100RefSeq proteinWP_242924021.1
Context group ID
GCF_022750565::NZ_QVIH01000007.1::G00018Context members
D0C48_RS10065
Partner locus tags
D0C48_RS10065
Partner old locus tags
D0C48_10100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242924021.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagD0C48_RS10065Primary locus identifier stored in the genes table.
Old locus tagD0C48_10100Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QVIH01000007.1Sequence record reported by the local genomic context database.
Genomic interval113 284-115 548 nt2 265 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span113 284-115 548 ntGCF_022750565::NZ_QVIH01000007.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022750565::NZ_QVIH01000007.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QVIH01000007.1All displayed genes belong to this local TCS context.
Neighborhood span113 284-115 548 nt2 265 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 284 nt115 548 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
D0C48_RS10065GCF_022750565#D0C48_RS10065
HKHybridCurrent focus
113 284-115 548 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022750565#D0C48_RS10065The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0659987
Simplified PFAM architecture for HKOC_0659987
PFAM domain coverage: 299 / 754 aa (39.7%)
1 aa754 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[370-436] | HATPase_c[482-597] | Response_reg[628-743]
- Domain count: 3
- Matched identifier: HKOC_0659987
- Positioned domains: HisKA 370-436 ; HATPase_c 482-597 ; Response_reg 628-743
Cluster members and taxonomy
Representative gene: GCF_022750565#D0C48_RS10065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 853 · GCF_022750565
AssemblyASM2275056v1 · Contighaploid
Genome composition3 243 905 bp · 56,0% GCFaecalibacterium prausnitzii
Signal transduction countsGenes 50 · HK 23 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusFaecalibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Faecalibacterium
Related genes
Preview from the same derived genome key