1 HAMP#1
168-235 aa · 68 aa · 15.0% of protein
Raw token
HAMP:168:0.000000000000553:235:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LQE99_RS09275
Histidine kinase, Classic
Amedibacillus hominis · GCF_022487425
ClassHKTypeClassicLength453 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022487425#LQE99_RS09275Stable P2CS identifier used across views.
GenomeGCF_022487425Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacillus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length453 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage225 / 453 aa (49.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa453 aa
Domain-by-domain annotation3 items
2 HisKA#2
240-303 aa · 64 aa · 14.1% of protein
Raw token
HisKA:240:0.00000000000107:303:64:643 HATPase_c#3
356-448 aa · 93 aa · 20.5% of protein
Raw token
HATPase_c:356:0.000000000000747:448:101:109- Raw architecture: HAMP:168:0.000000000000553:235:69:69#HisKA:240:0.00000000000107:303:64:64#HATPase_c:356:0.000000000000747:448:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022487425::NZ_JAKVPQ010000006.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span89112-91134Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLQE99_09275RefSeq proteinWP_240607442.1
Context group ID
GCF_022487425::NZ_JAKVPQ010000006.1::G00024Context members
LQE99_RS09270LQE99_RS09275
Partner locus tags
LQE99_RS09270LQE99_RS09275
Partner old locus tags
LQE99_09270LQE99_09275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_240607442.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R6Q4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R6Q4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLQE99_RS09275Primary locus identifier stored in the genes table.
Old locus tagLQE99_09275Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKVPQ010000006.1Sequence record reported by the local genomic context database.
Genomic interval89 773-91 134 nt1 362 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span89 112-91 134 ntGCF_022487425::NZ_JAKVPQ010000006.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022487425::NZ_JAKVPQ010000006.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKVPQ010000006.1All displayed genes belong to this local TCS context.
Neighborhood span89 112-91 134 nt2 023 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
89 112 nt91 134 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LQE99_RS09270GCF_022487425#LQE99_RS09270
RROmpR
89 112-89 771 nt · Forward (+)
LQE99_RS09275GCF_022487425#LQE99_RS09275
HKClassicCurrent focus
89 773-91 134 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022487425#LQE99_RS09275The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1931228
Simplified PFAM architecture for HKOC_1931228
PFAM domain coverage: 204 / 453 aa (45.0%)
1 aa453 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[188-234] | HisKA[240-303] | HATPase_c[354-446]
- Domain count: 3
- Matched identifier: HKOC_1931228
- Positioned domains: HAMP 188-234 ; HisKA 240-303 ; HATPase_c 354-446
Cluster members and taxonomy
Representative gene: GCF_022487425#LQE99_RS09275
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 897 776 · GCF_022487425
AssemblyASM2248742v1 · Contigreference genome · haploid
Genome composition4 356 631 bp · 35,5% GCAmedibacillus hominis
Signal transduction countsGenes 95 · HK 42 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacillus
Related genes
Preview from the same derived genome key