1 Response_reg#1
4-109 aa · 106 aa · 46.5% of protein
Raw token
Response_reg:4:0.000000000135:109:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LQE99_RS02375
Response regulator LytTR family
Amedibacillus hominis · GCF_022487425
ClassRRTypeLytTRLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022487425#LQE99_RS02375Stable P2CS identifier used across views.
GenomeGCF_022487425Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacillus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 228 aa (78.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 LytTR#2
134-206 aa · 73 aa · 32.0% of protein
Raw token
LytTR:134:0.000000387:206:78:98- Raw architecture: Response_reg:4:0.000000000135:109:115:111#LytTR:134:0.000000387:206:78:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022487425::NZ_JAKVPQ010000001.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span456528-457214Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLQE99_02375RefSeq proteinWP_117454913.1
Context group ID
GCF_022487425::NZ_JAKVPQ010000001.1::G00004Context members
LQE99_RS02375
Partner locus tags
LQE99_RS02375
Partner old locus tags
LQE99_02375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117454913.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R4B7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R4B7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLQE99_RS02375Primary locus identifier stored in the genes table.
Old locus tagLQE99_02375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKVPQ010000001.1Sequence record reported by the local genomic context database.
Genomic interval456 528-457 214 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span456 528-457 214 ntGCF_022487425::NZ_JAKVPQ010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022487425::NZ_JAKVPQ010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKVPQ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span456 528-457 214 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
456 528 nt457 214 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LQE99_RS02375GCF_022487425#LQE99_RS02375
RRLytTRCurrent focus
456 528-457 214 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS06975Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1314796
Simplified PFAM architecture for RROC_1314796
PFAM domain coverage: 187 / 228 aa (82.0%)
1 aa228 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[134-215]
- Domain count: 2
- Matched identifier: RROC_1314796
- Positioned domains: Response_reg 4-108 ; Response_reg 4-108 ; LytTR 134-215 ; LytTR 134-215
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS06975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 897 776 · GCF_022487425
AssemblyASM2248742v1 · Contigreference genome · haploid
Genome composition4 356 631 bp · 35,5% GCAmedibacillus hominis
Signal transduction countsGenes 95 · HK 42 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacillus
Related genes
Preview from the same derived genome key