1 Response_reg#1
5-112 aa · 108 aa · 47.2% of protein
Raw token
Response_reg:5:2.08e-37:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LQE99_RS00880
Response regulator OmpR family
Amedibacillus hominis · GCF_022487425
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022487425#LQE99_RS00880Stable P2CS identifier used across views.
GenomeGCF_022487425Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacillus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 229 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-228 aa · 78 aa · 34.1% of protein
Raw token
Trans_reg_C:151:6.64e-30:228:78:77- Raw architecture: Response_reg:5:2.08e-37:112:111:111#Trans_reg_C:151:6.64e-30:228:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022487425::NZ_JAKVPQ010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span165122-167111Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLQE99_00880RefSeq proteinWP_117454678.1
Context group ID
GCF_022487425::NZ_JAKVPQ010000001.1::G00002Context members
LQE99_RS00880LQE99_RS00885
Partner locus tags
LQE99_RS00880LQE99_RS00885
Partner old locus tags
LQE99_00880LQE99_00885
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117454678.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R1Z7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R1Z7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLQE99_RS00880Primary locus identifier stored in the genes table.
Old locus tagLQE99_00880Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKVPQ010000001.1Sequence record reported by the local genomic context database.
Genomic interval165 122-165 811 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span165 122-167 111 ntGCF_022487425::NZ_JAKVPQ010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022487425::NZ_JAKVPQ010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKVPQ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span165 122-167 111 nt1 990 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
165 122 nt167 111 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LQE99_RS00880GCF_022487425#LQE99_RS00880
RROmpRCurrent focus
165 122-165 811 nt · Forward (+)
LQE99_RS00885GCF_022487425#LQE99_RS00885
HKClassic
165 804-167 111 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS05895Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1260942
Simplified PFAM architecture for RROC_1260942
PFAM domain coverage: 184 / 229 aa (80.3%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-111] | Trans_reg_C[152-228]
- Domain count: 2
- Matched identifier: RROC_1260942
- Positioned domains: Response_reg 5-111 ; Response_reg 5-111 ; Trans_reg_C 152-228 ; Trans_reg_C 152-228
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS05895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 897 776 · GCF_022487425
AssemblyASM2248742v1 · Contigreference genome · haploid
Genome composition4 356 631 bp · 35,5% GCAmedibacillus hominis
Signal transduction countsGenes 95 · HK 42 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacillus
Related genes
Preview from the same derived genome key