1 HisKA#1
118-179 aa · 62 aa · 18.7% of protein
Raw token
HisKA:118:0.000000000000103:179:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LQE99_RS08310
Histidine kinase, Classic
Amedibacillus hominis · GCF_022487425
ClassHKTypeClassicLength331 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022487425#LQE99_RS08310Stable P2CS identifier used across views.
GenomeGCF_022487425Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacillus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length331 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 331 aa (50.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa331 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
224-329 aa · 106 aa · 32.0% of protein
Raw token
HATPase_c:224:9.04e-24:329:106:109- Raw architecture: HisKA:118:0.000000000000103:179:62:64#HATPase_c:224:9.04e-24:329:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022487425::NZ_JAKVPQ010000005.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span117818-119489Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLQE99_08310RefSeq proteinWP_117452359.1
Context group ID
GCF_022487425::NZ_JAKVPQ010000005.1::G00021Context members
LQE99_RS08310LQE99_RS08315
Partner locus tags
LQE99_RS08310LQE99_RS08315
Partner old locus tags
LQE99_08310LQE99_08315
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117452359.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R651Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R651_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLQE99_RS08310Primary locus identifier stored in the genes table.
Old locus tagLQE99_08310Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKVPQ010000005.1Sequence record reported by the local genomic context database.
Genomic interval117 818-118 813 nt996 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span117 818-119 489 ntGCF_022487425::NZ_JAKVPQ010000005.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022487425::NZ_JAKVPQ010000005.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKVPQ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span117 818-119 489 nt1 672 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
117 818 nt119 489 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LQE99_RS08310GCF_022487425#LQE99_RS08310
HKClassicCurrent focus
117 818-118 813 nt · Reverse (-)
LQE99_RS08315GCF_022487425#LQE99_RS08315
RROmpR
118 803-119 489 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS08095Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2855577
Simplified PFAM architecture for HKOC_2855577
PFAM domain coverage: 166 / 331 aa (50.2%)
1 aa331 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[118-178] | HATPase_c[225-329]
- Domain count: 2
- Matched identifier: HKOC_2855577
- Positioned domains: HisKA 118-178 ; HATPase_c 225-329
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS08095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 897 776 · GCF_022487425
AssemblyASM2248742v1 · Contigreference genome · haploid
Genome composition4 356 631 bp · 35,5% GCAmedibacillus hominis
Signal transduction countsGenes 95 · HK 42 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacillus
Related genes
Preview from the same derived genome key