1 HisKA#1
211-267 aa · 57 aa · 13.5% of protein
Raw token
HisKA:211:0.0000000406:267:57:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LQE99_RS07005
Histidine kinase, Classic
Amedibacillus hominis · GCF_022487425
ClassHKTypeClassicLength421 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022487425#LQE99_RS07005Stable P2CS identifier used across views.
GenomeGCF_022487425Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacillus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length421 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 421 aa (38.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa421 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
316-420 aa · 105 aa · 24.9% of protein
Raw token
HATPase_c:316:3.43e-19:420:105:109- Raw architecture: HisKA:211:0.0000000406:267:57:64#HATPase_c:316:3.43e-19:420:105:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022487425::NZ_JAKVPQ010000004.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span81071-83000Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLQE99_07005RefSeq proteinWP_117452760.1
Context group ID
GCF_022487425::NZ_JAKVPQ010000004.1::G00017Context members
LQE99_RS07005LQE99_RS07010
Partner locus tags
LQE99_RS07005LQE99_RS07010
Partner old locus tags
LQE99_07005LQE99_07010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117452760.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R6U2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R6U2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLQE99_RS07005Primary locus identifier stored in the genes table.
Old locus tagLQE99_07005Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKVPQ010000004.1Sequence record reported by the local genomic context database.
Genomic interval81 071-82 336 nt1 266 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span81 071-83 000 ntGCF_022487425::NZ_JAKVPQ010000004.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022487425::NZ_JAKVPQ010000004.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKVPQ010000004.1All displayed genes belong to this local TCS context.
Neighborhood span81 071-83 000 nt1 930 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 071 nt83 000 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LQE99_RS07005GCF_022487425#LQE99_RS07005
HKClassicCurrent focus
81 071-82 336 nt · Reverse (-)
LQE99_RS07010GCF_022487425#LQE99_RS07010
RROmpR
82 323-83 000 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS08995Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2258468
Simplified PFAM architecture for HKOC_2258468
PFAM domain coverage: 163 / 421 aa (38.7%)
1 aa421 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[208-267] | HATPase_c[316-418]
- Domain count: 2
- Matched identifier: HKOC_2258468
- Positioned domains: HisKA 208-267 ; HATPase_c 316-418
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS08995
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 897 776 · GCF_022487425
AssemblyASM2248742v1 · Contigreference genome · haploid
Genome composition4 356 631 bp · 35,5% GCAmedibacillus hominis
Signal transduction countsGenes 95 · HK 42 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacillus
Related genes
Preview from the same derived genome key