1 HisKA#1
272-339 aa · 68 aa · 13.6% of protein
Raw token
HisKA:272:0.000000000000456:339:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LQE99_RS06225
Histidine kinase, Classic
Amedibacillus hominis · GCF_022487425
ClassHKTypeClassicLength501 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022487425#LQE99_RS06225Stable P2CS identifier used across views.
GenomeGCF_022487425Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacillus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length501 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 501 aa (35.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa501 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
384-495 aa · 112 aa · 22.4% of protein
Raw token
HATPase_c:384:4.53e-25:495:112:109- Raw architecture: HisKA:272:0.000000000000456:339:68:64#HATPase_c:384:4.53e-25:495:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022487425::NZ_JAKVPQ010000003.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span284755-286939Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLQE99_06225RefSeq proteinWP_117451684.1
Context group ID
GCF_022487425::NZ_JAKVPQ010000003.1::G00016Context members
LQE99_RS06225LQE99_RS06230
Partner locus tags
LQE99_RS06225LQE99_RS06230
Partner old locus tags
LQE99_06225LQE99_06230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117451684.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R4Z4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R4Z4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLQE99_RS06225Primary locus identifier stored in the genes table.
Old locus tagLQE99_06225Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKVPQ010000003.1Sequence record reported by the local genomic context database.
Genomic interval284 755-286 260 nt1 506 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span284 755-286 939 ntGCF_022487425::NZ_JAKVPQ010000003.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022487425::NZ_JAKVPQ010000003.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKVPQ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span284 755-286 939 nt2 185 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
284 755 nt286 939 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LQE99_RS06225GCF_022487425#LQE99_RS06225
HKClassicCurrent focus
284 755-286 260 nt · Forward (+)
LQE99_RS06230GCF_022487425#LQE99_RS06230
RROmpR
286 253-286 939 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS13545Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1469959
Simplified PFAM architecture for HKOC_1469959
PFAM domain coverage: 282 / 501 aa (56.3%)
1 aa501 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[11-115] | HisKA[272-339] | HATPase_c[386-494]
- Domain count: 3
- Matched identifier: HKOC_1469959
- Positioned domains: DUF4118 11-115 ; HisKA 272-339 ; HATPase_c 386-494
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS13545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 897 776 · GCF_022487425
AssemblyASM2248742v1 · Contigreference genome · haploid
Genome composition4 356 631 bp · 35,5% GCAmedibacillus hominis
Signal transduction countsGenes 95 · HK 42 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacillus
Related genes
Preview from the same derived genome key