1 Response_reg#1
4-109 aa · 106 aa · 21.6% of protein
Raw token
Response_reg:4:3.92e-21:109:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LQE99_RS04535
Response regulator, unclassified
Amedibacillus hominis · GCF_022487425
ClassRRTypeunclassifiedLength491 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022487425#LQE99_RS04535Stable P2CS identifier used across views.
GenomeGCF_022487425Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacillus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length491 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage181 / 491 aa (36.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa491 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
399-440 aa · 42 aa · 8.6% of protein
Raw token
HTH_AraC:399:0.0000884:440:42:423 HTH_AraC#3
457-489 aa · 33 aa · 6.7% of protein
Raw token
HTH_AraC:457:0.000000000441:489:33:42- Raw architecture: Response_reg:4:3.92e-21:109:106:111#HTH_AraC:399:0.0000884:440:42:42#HTH_AraC:457:0.000000000441:489:33:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022487425::NZ_JAKVPQ010000002.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span414272-417229Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLQE99_04535RefSeq proteinWP_117453791.1
Context group ID
GCF_022487425::NZ_JAKVPQ010000002.1::G00012Context members
LQE99_RS04530LQE99_RS04535
Partner locus tags
LQE99_RS04530LQE99_RS04535
Partner old locus tags
LQE99_04530LQE99_04535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117453791.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R409Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R409_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLQE99_RS04535Primary locus identifier stored in the genes table.
Old locus tagLQE99_04535Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKVPQ010000002.1Sequence record reported by the local genomic context database.
Genomic interval415 754-417 229 nt1 476 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span414 272-417 229 ntGCF_022487425::NZ_JAKVPQ010000002.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022487425::NZ_JAKVPQ010000002.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKVPQ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span414 272-417 229 nt2 958 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
414 272 nt417 229 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LQE99_RS04530GCF_022487425#LQE99_RS04530
HKClassic
414 272-415 735 nt · Forward (+)
LQE99_RS04535GCF_022487425#LQE99_RS04535
RRunclassifiedCurrent focus
415 754-417 229 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS03335Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0167902
Simplified PFAM architecture for RROC_0167902
PFAM domain coverage: 188 / 491 aa (38.3%)
1 aa491 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-114] | HTH_18[413-489]
- Domain count: 2
- Matched identifier: RROC_0167902
- Positioned domains: Response_reg 4-114 ; Response_reg 4-114 ; HTH_18 413-489 ; HTH_18 413-489
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS03335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 897 776 · GCF_022487425
AssemblyASM2248742v1 · Contigreference genome · haploid
Genome composition4 356 631 bp · 35,5% GCAmedibacillus hominis
Signal transduction countsGenes 95 · HK 42 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacillus
Related genes
Preview from the same derived genome key