1 HAMP#1
179-249 aa · 71 aa · 14.6% of protein
Raw token
HAMP:179:0.0000000351:249:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LQE99_RS04530
Histidine kinase, Classic
Amedibacillus hominis · GCF_022487425
ClassHKTypeClassicLength487 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022487425#LQE99_RS04530Stable P2CS identifier used across views.
GenomeGCF_022487425Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacillus
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length487 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage261 / 487 aa (53.6%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa487 aa
Domain-by-domain annotation3 items
2 His_kinase#2
281-360 aa · 80 aa · 16.4% of protein
Raw token
His_kinase:281:8.37e-31:360:80:803 HATPase_c#3
373-482 aa · 110 aa · 22.6% of protein
Raw token
HATPase_c:373:0.00000000000000638:482:113:109- Raw architecture: HAMP:179:0.0000000351:249:71:69#His_kinase:281:8.37e-31:360:80:80#HATPase_c:373:0.00000000000000638:482:113:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022487425::NZ_JAKVPQ010000002.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span414272-417229Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLQE99_04530RefSeq proteinWP_178695057.1
Context group ID
GCF_022487425::NZ_JAKVPQ010000002.1::G00012Context members
LQE99_RS04530LQE99_RS04535
Partner locus tags
LQE99_RS04530LQE99_RS04535
Partner old locus tags
LQE99_04530LQE99_04535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_178695057.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R424Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R424_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLQE99_RS04530Primary locus identifier stored in the genes table.
Old locus tagLQE99_04530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKVPQ010000002.1Sequence record reported by the local genomic context database.
Genomic interval414 272-415 735 nt1 464 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span414 272-417 229 ntGCF_022487425::NZ_JAKVPQ010000002.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022487425::NZ_JAKVPQ010000002.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKVPQ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span414 272-417 229 nt2 958 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
414 272 nt417 229 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LQE99_RS04530GCF_022487425#LQE99_RS04530
HKClassicCurrent focus
414 272-415 735 nt · Forward (+)
LQE99_RS04535GCF_022487425#LQE99_RS04535
RRunclassified
415 754-417 229 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_022487425#LQE99_RS04530The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1563275
Simplified PFAM architecture for HKOC_1563275
PFAM domain coverage: 185 / 487 aa (38.0%)
1 aa487 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[281-360] | HATPase_c[379-483]
- Domain count: 2
- Matched identifier: HKOC_1563275
- Positioned domains: His_kinase 281-360 ; HATPase_c 379-483
Cluster members and taxonomy
Representative gene: GCF_022487425#LQE99_RS04530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 897 776 · GCF_022487425
AssemblyASM2248742v1 · Contigreference genome · haploid
Genome composition4 356 631 bp · 35,5% GCAmedibacillus hominis
Signal transduction countsGenes 95 · HK 42 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacillus
Related genes
Preview from the same derived genome key