1 Hpt#1
11-94 aa · 84 aa · 12.5% of protein
Raw token
Hpt:11:0.000000000229:94:86:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LQE99_RS04045
Histidine kinase, CheA
Amedibacillus hominis · GCF_022487425
ClassHKTypeCheALength671 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022487425#LQE99_RS04045Stable P2CS identifier used across views.
GenomeGCF_022487425Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacillus
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length671 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage418 / 671 aa (62.3%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa671 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
277-337 aa · 61 aa · 9.1% of protein
Raw token
H-kinase_dim:277:0.0000187:337:68:673 HATPase_c#3
385-522 aa · 138 aa · 20.6% of protein
Raw token
HATPase_c:385:6.2e-18:522:138:1094 CheW#4
527-661 aa · 135 aa · 20.1% of protein
Raw token
CheW:527:4.59e-17:661:140:138- Raw architecture: Hpt:11:0.000000000229:94:86:84#H-kinase_dim:277:0.0000187:337:68:67#HATPase_c:385:6.2e-18:522:138:109#CheW:527:4.59e-17:661:140:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022487425::NZ_JAKVPQ010000002.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span307329-310288Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLQE99_04045RefSeq proteinWP_117453065.1
Context group ID
GCF_022487425::NZ_JAKVPQ010000002.1::G00010Context members
LQE99_RS04040LQE99_RS04045
Partner locus tags
LQE99_RS04040LQE99_RS04045
Partner old locus tags
LQE99_04040LQE99_04045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117453065.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R3R5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R3R5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLQE99_RS04045Primary locus identifier stored in the genes table.
Old locus tagLQE99_04045Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKVPQ010000002.1Sequence record reported by the local genomic context database.
Genomic interval308 273-310 288 nt2 016 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span307 329-310 288 ntGCF_022487425::NZ_JAKVPQ010000002.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022487425::NZ_JAKVPQ010000002.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKVPQ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span307 329-310 288 nt2 960 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
307 329 nt310 288 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LQE99_RS04040GCF_022487425#LQE99_RS04040
RRPleD
307 329-308 255 nt · Forward (+)
LQE99_RS04045GCF_022487425#LQE99_RS04045
HKCheACurrent focus
308 273-310 288 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS03835Use this link to inspect the representative gene detail.
PFAM architectureHpt + P2 + HATPase_c + CheW4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0843203
Simplified PFAM architecture for HKOC_0843203
PFAM domain coverage: 424 / 671 aa (63.2%)
1 aa671 aa
HptP2HATPase_cCheW
- Simplified architecture: Hpt + P2 + HATPase_c + CheW
- Raw architecture: Hpt[11-86] | P2[165-244] | HATPase_c[387-522] | CheW[529-660]
- Domain count: 4
- Matched identifier: HKOC_0843203
- Positioned domains: Hpt 11-86 ; P2 165-244 ; HATPase_c 387-522 ; CheW 529-660
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS03835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 897 776 · GCF_022487425
AssemblyASM2248742v1 · Contigreference genome · haploid
Genome composition4 356 631 bp · 35,5% GCAmedibacillus hominis
Signal transduction countsGenes 95 · HK 42 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacillus
Related genes
Preview from the same derived genome key