1 Response_reg#1
5-115 aa · 111 aa · 90.2% of protein
Raw token
Response_reg:5:2.76e-34:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LQE99_RS04025
Response regulator, CheY family
Amedibacillus hominis · GCF_022487425
ClassRRTypeCheYLength123 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022487425#LQE99_RS04025Stable P2CS identifier used across views.
GenomeGCF_022487425Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacillus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length123 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 123 aa (90.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa123 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:2.76e-34:115:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022487425::NZ_JAKVPQ010000002.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span305833-306204Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLQE99_04025RefSeq proteinWP_117453061.1
Context group ID
GCF_022487425::NZ_JAKVPQ010000002.1::G00009Context members
LQE99_RS04025
Partner locus tags
LQE99_RS04025
Partner old locus tags
LQE99_04025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117453061.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R3T7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R3T7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLQE99_RS04025Primary locus identifier stored in the genes table.
Old locus tagLQE99_04025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKVPQ010000002.1Sequence record reported by the local genomic context database.
Genomic interval305 833-306 204 nt372 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span305 833-306 204 ntGCF_022487425::NZ_JAKVPQ010000002.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022487425::NZ_JAKVPQ010000002.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKVPQ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span305 833-306 204 nt372 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
305 833 nt306 204 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LQE99_RS04025GCF_022487425#LQE99_RS04025
RRCheYCurrent focus
305 833-306 204 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS03855Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2394673
Simplified PFAM architecture for RROC_2394673
PFAM domain coverage: 110 / 123 aa (89.4%)
1 aa123 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-114]
- Domain count: 1
- Matched identifier: RROC_2394673
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS03855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 897 776 · GCF_022487425
AssemblyASM2248742v1 · Contigreference genome · haploid
Genome composition4 356 631 bp · 35,5% GCAmedibacillus hominis
Signal transduction countsGenes 95 · HK 42 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacillus
Related genes
Preview from the same derived genome key