1 HisKA#1
127-175 aa · 49 aa · 14.5% of protein
Raw token
HisKA:127:0.00000684:175:55:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LQE99_RS03050
Histidine kinase, Classic
Amedibacillus hominis · GCF_022487425
ClassHKTypeClassicLength339 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022487425#LQE99_RS03050Stable P2CS identifier used across views.
GenomeGCF_022487425Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacillus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length339 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 339 aa (47.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa339 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
221-331 aa · 111 aa · 32.7% of protein
Raw token
HATPase_c:221:2.18e-20:331:111:109- Raw architecture: HisKA:127:0.00000684:175:55:64#HATPase_c:221:2.18e-20:331:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022487425::NZ_JAKVPQ010000002.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span99121-100802Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLQE99_03050RefSeq proteinWP_117454227.1
Context group ID
GCF_022487425::NZ_JAKVPQ010000002.1::G00005Context members
LQE99_RS03045LQE99_RS03050
Partner locus tags
LQE99_RS03045LQE99_RS03050
Partner old locus tags
LQE99_03045LQE99_03050
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117454227.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R374Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R374_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLQE99_RS03050Primary locus identifier stored in the genes table.
Old locus tagLQE99_03050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKVPQ010000002.1Sequence record reported by the local genomic context database.
Genomic interval99 783-100 802 nt1 020 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span99 121-100 802 ntGCF_022487425::NZ_JAKVPQ010000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022487425::NZ_JAKVPQ010000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKVPQ010000002.1All displayed genes belong to this local TCS context.
Neighborhood span99 121-100 802 nt1 682 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
99 121 nt100 802 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LQE99_RS03045GCF_022487425#LQE99_RS03045
RROmpR
99 121-99 786 nt · Forward (+)
LQE99_RS03050GCF_022487425#LQE99_RS03050
HKClassicCurrent focus
99 783-100 802 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS04830Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2840288
Simplified PFAM architecture for HKOC_2840288
PFAM domain coverage: 112 / 339 aa (33.0%)
1 aa339 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[221-332]
- Domain count: 1
- Matched identifier: HKOC_2840288
- Positioned domains: HATPase_c 221-332
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS04830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 897 776 · GCF_022487425
AssemblyASM2248742v1 · Contigreference genome · haploid
Genome composition4 356 631 bp · 35,5% GCAmedibacillus hominis
Signal transduction countsGenes 95 · HK 42 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacillus
Related genes
Preview from the same derived genome key