1 Response_reg#1
4-99 aa · 96 aa · 41.6% of protein
Raw token
Response_reg:4:0.000000000127:99:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LQE99_RS00790
Response regulator LytTR family
Amedibacillus hominis · GCF_022487425
ClassRRTypeLytTRLength231 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_022487425#LQE99_RS00790Stable P2CS identifier used across views.
GenomeGCF_022487425Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacillus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 231 aa (80.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 LytTR#2
126-215 aa · 90 aa · 39.0% of protein
Raw token
LytTR:126:0.000000000124:215:95:98- Raw architecture: Response_reg:4:0.000000000127:99:102:111#LytTR:126:0.000000000124:215:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_022487425::NZ_JAKVPQ010000001.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span146199-146894Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLQE99_00790RefSeq proteinWP_117454661.1
Context group ID
GCF_022487425::NZ_JAKVPQ010000001.1::G00001Context members
LQE99_RS00790
Partner locus tags
LQE99_RS00790
Partner old locus tags
LQE99_00790
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_117454661.1Primary protein accession used for annex mappings.
UniProt accessionA0ABS9R1Y2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABS9R1Y2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLQE99_RS00790Primary locus identifier stored in the genes table.
Old locus tagLQE99_00790Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKVPQ010000001.1Sequence record reported by the local genomic context database.
Genomic interval146 199-146 894 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span146 199-146 894 ntGCF_022487425::NZ_JAKVPQ010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022487425::NZ_JAKVPQ010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKVPQ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span146 199-146 894 nt696 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
146 199 nt146 894 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LQE99_RS00790GCF_022487425#LQE99_RS00790
RRLytTRCurrent focus
146 199-146 894 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003433695#DW271_RS05805Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1168132
Simplified PFAM architecture for RROC_1168132
PFAM domain coverage: 190 / 231 aa (82.3%)
1 aa231 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-106] | LytTR[129-216]
- Domain count: 2
- Matched identifier: RROC_1168132
- Positioned domains: Response_reg 5-106 ; Response_reg 5-106 ; LytTR 129-216 ; LytTR 129-216
Cluster members and taxonomy
Representative gene: GCF_003433695#DW271_RS05805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 897 776 · GCF_022487425
AssemblyASM2248742v1 · Contigreference genome · haploid
Genome composition4 356 631 bp · 35,5% GCAmedibacillus hominis
Signal transduction countsGenes 95 · HK 42 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacillus
Related genes
Preview from the same derived genome key