1 dCache_1#1
175-274 aa · 100 aa · 16.9% of protein
Raw token
dCache_1:175:0.000066:274:109:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L0P07_RS00180
Histidine kinase, Classic
Blautia faecis · GCF_022136745
ClassHKTypeClassicLength592 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022136745#L0P07_RS00180Stable P2CS identifier used across views.
GenomeGCF_022136745Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length592 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage364 / 592 aa (61.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa592 aa
Domain-by-domain annotation4 items
2 HAMP#2
295-366 aa · 72 aa · 12.2% of protein
Raw token
HAMP:295:0.00000472:366:72:693 His_kinase#3
381-459 aa · 79 aa · 13.3% of protein
Raw token
His_kinase:381:5.71e-28:459:80:804 HATPase_c#4
475-587 aa · 113 aa · 19.1% of protein
Raw token
HATPase_c:475:0.000000000000168:587:113:109- Raw architecture: dCache_1:175:0.000066:274:109:195#HAMP:295:0.00000472:366:72:69#His_kinase:381:5.71e-28:459:80:80#HATPase_c:475:0.000000000000168:587:113:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022136745::NZ_JAKNFE010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span40684-44000Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL0P07_00180RefSeq proteinWP_173719694.1
Context group ID
GCF_022136745::NZ_JAKNFE010000001.1::G00002Context members
L0P07_RS00175L0P07_RS00180
Partner locus tags
L0P07_RS00175L0P07_RS00180
Partner old locus tags
L0P07_00175L0P07_00180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173719694.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL0P07_RS00180Primary locus identifier stored in the genes table.
Old locus tagL0P07_00180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKNFE010000001.1Sequence record reported by the local genomic context database.
Genomic interval42 222-44 000 nt1 779 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span40 684-44 000 ntGCF_022136745::NZ_JAKNFE010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022136745::NZ_JAKNFE010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKNFE010000001.1All displayed genes belong to this local TCS context.
Neighborhood span40 684-44 000 nt3 317 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 684 nt44 000 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
L0P07_RS00175GCF_022136745#L0P07_RS00175
RRunclassified
40 684-42 219 nt · Reverse (-)
L0P07_RS00180GCF_022136745#L0P07_RS00180
HKClassicCurrent focus
42 222-44 000 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300845#G5B24_RS19255Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1101421
Simplified PFAM architecture for HKOC_1101421
PFAM domain coverage: 191 / 592 aa (32.3%)
1 aa592 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[381-458] | HATPase_c[475-587]
- Domain count: 2
- Matched identifier: HKOC_1101421
- Positioned domains: His_kinase 381-458 ; HATPase_c 475-587
Cluster members and taxonomy
Representative gene: GCF_013300845#G5B24_RS19255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_022136745
AssemblyContighaploid
Genome composition4 270 763 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 137 · HK 70 · RR 66CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key