1 dCache_1#1
175-274 aa · 100 aa · 16.9% of protein
Raw token
dCache_1:175:0.000066:274:109:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B24_RS19255
Histidine kinase, Classic
Blautia glucerasea · GCF_013300845
ClassHKTypeClassicLength592 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300845#G5B24_RS19255Stable P2CS identifier used across views.
GenomeGCF_013300845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length592 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage364 / 592 aa (61.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa592 aa
Domain-by-domain annotation4 items
2 HAMP#2
295-366 aa · 72 aa · 12.2% of protein
Raw token
HAMP:295:0.00000472:366:72:693 His_kinase#3
381-459 aa · 79 aa · 13.3% of protein
Raw token
His_kinase:381:5.71e-28:459:80:804 HATPase_c#4
475-587 aa · 113 aa · 19.1% of protein
Raw token
HATPase_c:475:0.000000000000168:587:113:109- Raw architecture: dCache_1:175:0.000066:274:109:195#HAMP:295:0.00000472:366:72:69#His_kinase:381:5.71e-28:459:80:80#HATPase_c:475:0.000000000000168:587:113:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300845::NZ_JAAIUB010000095.1::G00077
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span458-3774Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B24_19275RefSeq proteinWP_173719694.1
Context group ID
GCF_013300845::NZ_JAAIUB010000095.1::G00077Context members
G5B24_RS19250G5B24_RS19255
Partner locus tags
G5B24_RS19250G5B24_RS19255
Partner old locus tags
G5B24_19270G5B24_19275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173719694.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B24_RS19255Primary locus identifier stored in the genes table.
Old locus tagG5B24_19275Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIUB010000095.1Sequence record reported by the local genomic context database.
Genomic interval1 996-3 774 nt1 779 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span458-3 774 ntGCF_013300845::NZ_JAAIUB010000095.1::G00077
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300845::NZ_JAAIUB010000095.1::G00077Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIUB010000095.1All displayed genes belong to this local TCS context.
Neighborhood span458-3 774 nt3 317 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
458 nt3 774 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5B24_RS19250GCF_013300845#G5B24_RS19250
RRunclassified
458-1 993 nt · Reverse (-)
G5B24_RS19255GCF_013300845#G5B24_RS19255
HKClassicCurrent focus
1 996-3 774 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300845#G5B24_RS19255The current gene is the representative for this cluster.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1101421
Simplified PFAM architecture for HKOC_1101421
PFAM domain coverage: 191 / 592 aa (32.3%)
1 aa592 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[381-458] | HATPase_c[475-587]
- Domain count: 2
- Matched identifier: HKOC_1101421
- Positioned domains: His_kinase 381-458 ; HATPase_c 475-587
Cluster members and taxonomy
Representative gene: GCF_013300845#G5B24_RS19255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 633 · GCF_013300845
AssemblyASM1330084v1 · Contigreference genome · haploid
Genome composition4 398 197 bp · 42,5% GCBlautia glucerasea
Signal transduction countsGenes 130 · HK 65 · RR 64CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key