1 HAMP#1
176-244 aa · 69 aa · 14.5% of protein
Raw token
HAMP:176:0.0000000414:244:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
L0P07_RS00545
Histidine kinase, Classic
Blautia faecis · GCF_022136745
ClassHKTypeClassicLength475 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_022136745#L0P07_RS00545Stable P2CS identifier used across views.
GenomeGCF_022136745Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length475 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 475 aa (51.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa475 aa
Domain-by-domain annotation3 items
2 HisKA#2
249-314 aa · 66 aa · 13.9% of protein
Raw token
HisKA:249:0.00000000000548:314:66:643 HATPase_c#3
362-471 aa · 110 aa · 23.2% of protein
Raw token
HATPase_c:362:2.93e-30:471:110:109- Raw architecture: HAMP:176:0.0000000414:244:69:69#HisKA:249:0.00000000000548:314:66:64#HATPase_c:362:2.93e-30:471:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_022136745::NZ_JAKNFE010000001.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span136151-138271Genomic interval covered by the local TCS group.
Identifiers
Old locus tagL0P07_00545RefSeq proteinWP_148461740.1
Context group ID
GCF_022136745::NZ_JAKNFE010000001.1::G00004Context members
L0P07_RS00545L0P07_RS00550
Partner locus tags
L0P07_RS00545L0P07_RS00550
Partner old locus tags
L0P07_00545L0P07_00550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_148461740.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2H529Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2H529_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagL0P07_RS00545Primary locus identifier stored in the genes table.
Old locus tagL0P07_00545Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAKNFE010000001.1Sequence record reported by the local genomic context database.
Genomic interval136 151-137 578 nt1 428 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span136 151-138 271 ntGCF_022136745::NZ_JAKNFE010000001.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_022136745::NZ_JAKNFE010000001.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAKNFE010000001.1All displayed genes belong to this local TCS context.
Neighborhood span136 151-138 271 nt2 121 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
136 151 nt138 271 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
L0P07_RS00545GCF_022136745#L0P07_RS00545
HKClassicCurrent focus
136 151-137 578 nt · Reverse (-)
L0P07_RS00550GCF_022136745#L0P07_RS00550
RROmpR
137 582-138 271 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300155#G4470_RS05885Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1667909
Simplified PFAM architecture for HKOC_1667909
PFAM domain coverage: 176 / 475 aa (37.1%)
1 aa475 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[249-314] | HATPase_c[362-471]
- Domain count: 2
- Matched identifier: HKOC_1667909
- Positioned domains: HisKA 249-314 ; HATPase_c 362-471
Cluster members and taxonomy
Representative gene: GCF_013300155#G4470_RS05885
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_022136745
AssemblyContighaploid
Genome composition4 270 763 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 137 · HK 70 · RR 66CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key