1 Response_reg#1
5-114 aa · 110 aa · 73.3% of protein
Raw token
Response_reg:5:5.64e-37:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS21085
Response regulator, CheY family
Terrisporobacter mayombei · GCF_020748465
ClassRRTypeCheYLength150 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020748465#K0039_RS21085Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length150 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage110 / 150 aa (73.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa150 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:5.64e-37:114:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020748465::NZ_JAHZMP010000194.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span19-467Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_20965RefSeq proteinWP_228106868.1
Context group ID
GCF_020748465::NZ_JAHZMP010000194.1::G00006Context members
K0039_RS21085
Partner locus tags
K0039_RS21085
Partner old locus tags
K0039_20965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_228106868.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS21085Primary locus identifier stored in the genes table.
Old locus tagK0039_20965Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000194.1Sequence record reported by the local genomic context database.
Genomic interval19-467 nt449 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span19-467 ntGCF_020748465::NZ_JAHZMP010000194.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000194.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000194.1All displayed genes belong to this local TCS context.
Neighborhood span19-467 nt449 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 nt467 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K0039_RS21085GCF_020748465#K0039_RS21085
RRCheYCurrent focus
19-467 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS21085The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2228690
Simplified PFAM architecture for RROC_2228690
PFAM domain coverage: 109 / 150 aa (72.7%)
1 aa150 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-113]
- Domain count: 1
- Matched identifier: RROC_2228690
- Positioned domains: Response_reg 5-113
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS21085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key