1 Hpt#1
11-95 aa · 85 aa · 11.9% of protein
Raw token
Hpt:11:0.0000000000000848:95:85:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS19365
Histidine kinase, CheA
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeCheALength715 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS19365Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length715 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage411 / 715 aa (57.5%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa715 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
335-392 aa · 58 aa · 8.1% of protein
Raw token
H-kinase_dim:335:0.0000000000000656:392:63:673 HATPase_c#3
437-578 aa · 142 aa · 19.9% of protein
Raw token
HATPase_c:437:5.28e-16:578:142:1094 CheW#4
590-715 aa · 126 aa · 17.6% of protein
Raw token
CheW:590:8.55e-23:715:129:138- Raw architecture: Hpt:11:0.0000000000000848:95:85:84#H-kinase_dim:335:0.0000000000000656:392:63:67#HATPase_c:437:5.28e-16:578:142:109#CheW:590:8.55e-23:715:129:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000012.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26688-29921Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_19260RefSeq proteinWP_228106688.1
Context group ID
GCF_020748465::NZ_JAHZMP010000012.1::G00004Context members
K0039_RS19360K0039_RS19365
Partner locus tags
K0039_RS19360K0039_RS19365
Partner old locus tags
K0039_19255K0039_19260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228106688.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q6G1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q6G1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS19365Primary locus identifier stored in the genes table.
Old locus tagK0039_19260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000012.1Sequence record reported by the local genomic context database.
Genomic interval27 774-29 921 nt2 148 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 688-29 921 ntGCF_020748465::NZ_JAHZMP010000012.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000012.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000012.1All displayed genes belong to this local TCS context.
Neighborhood span26 688-29 921 nt3 234 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 688 nt29 921 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS19360GCF_020748465#K0039_RS19360
RRCheB
26 688-27 743 nt · Reverse (-)
K0039_RS19365GCF_020748465#K0039_RS19365
HKCheACurrent focus
27 774-29 921 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS19365The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0743103
Simplified PFAM architecture for HKOC_0743103
PFAM domain coverage: 512 / 715 aa (71.6%)
1 aa715 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[11-111] | P2[173-254] | H-kinase_dim[332-392] | HATPase_c[439-578] | CheW[587-714]
- Domain count: 5
- Matched identifier: HKOC_0743103
- Positioned domains: Hpt 11-111 ; P2 173-254 ; H-kinase_dim 332-392 ; HATPase_c 439-578 ; CheW 587-714
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS19365
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key