1 Response_reg#1
7-105 aa · 99 aa · 28.2% of protein
Raw token
Response_reg:7:6.09e-22:105:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS19360
Response regulator, CheB family
Terrisporobacter mayombei · GCF_020748465
ClassRRTypeCheBLength351 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS19360Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
Response_regCheB_methylest
Protein length351 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage278 / 351 aa (79.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 CheB_methylestSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa351 aa
Domain-by-domain annotation2 items
2 CheB_methylest#2
162-340 aa · 179 aa · 51.0% of protein
Raw token
CheB_methylest:162:5.42e-82:340:180:177- Raw architecture: Response_reg:7:6.09e-22:105:102:111#CheB_methylest:162:5.42e-82:340:180:177
- Domain description: 1 Response_reg,1 CheB_methylest
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000012.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26688-29921Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_19255RefSeq proteinWP_228106687.1
Context group ID
GCF_020748465::NZ_JAHZMP010000012.1::G00004Context members
K0039_RS19360K0039_RS19365
Partner locus tags
K0039_RS19360K0039_RS19365
Partner old locus tags
K0039_19255K0039_19260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228106687.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q6H5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q6H5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS19360Primary locus identifier stored in the genes table.
Old locus tagK0039_19255Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000012.1Sequence record reported by the local genomic context database.
Genomic interval26 688-27 743 nt1 056 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 688-29 921 ntGCF_020748465::NZ_JAHZMP010000012.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000012.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000012.1All displayed genes belong to this local TCS context.
Neighborhood span26 688-29 921 nt3 234 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 688 nt29 921 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS19360GCF_020748465#K0039_RS19360
RRCheBCurrent focus
26 688-27 743 nt · Reverse (-)
K0039_RS19365GCF_020748465#K0039_RS19365
HKCheA
27 774-29 921 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS19360The current gene is the representative for this cluster.
PFAM architectureResponse_reg + CheB_methylest2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0478638
Simplified PFAM architecture for RROC_0478638
PFAM domain coverage: 280 / 351 aa (79.8%)
1 aa351 aa
Response_regCheB_methylest
- Simplified architecture: Response_reg + CheB_methylest
- Raw architecture: Response_reg[7-107] | CheB_methylest[162-340]
- Domain count: 2
- Matched identifier: RROC_0478638
- Positioned domains: Response_reg 7-107 ; CheB_methylest 162-340
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS19360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key