1 MASE3#1
58-222 aa · 165 aa · 25.0% of protein
Raw token
MASE3:58:0.0000459:222:179:226P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS19255
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength660 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020748465#K0039_RS19255Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
MASE3HisKAHATPase_c
Protein length660 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage346 / 660 aa (52.4%)Merged over positioned domains only.
Domain description1 MASE3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa660 aa
Domain-by-domain annotation3 items
2 HisKA#2
403-474 aa · 72 aa · 10.9% of protein
Raw token
HisKA:403:0.00000000000000457:474:72:643 HATPase_c#3
521-629 aa · 109 aa · 16.5% of protein
Raw token
HATPase_c:521:2.21e-28:629:109:109- Raw architecture: MASE3:58:0.0000459:222:179:226#HisKA:403:0.00000000000000457:474:72:64#HATPase_c:521:2.21e-28:629:109:109
- Domain description: 1 MASE3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020748465::NZ_JAHZMP010000012.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span13374-15356Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_19145RefSeq proteinWP_228106670.1
Context group ID
GCF_020748465::NZ_JAHZMP010000012.1::G00002Context members
K0039_RS19255
Partner locus tags
K0039_RS19255
Partner old locus tags
K0039_19145
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228106670.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q7W7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q7W7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS19255Primary locus identifier stored in the genes table.
Old locus tagK0039_19145Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000012.1Sequence record reported by the local genomic context database.
Genomic interval13 374-15 356 nt1 983 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 374-15 356 ntGCF_020748465::NZ_JAHZMP010000012.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000012.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000012.1All displayed genes belong to this local TCS context.
Neighborhood span13 374-15 356 nt1 983 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 374 nt15 356 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K0039_RS19255GCF_020748465#K0039_RS19255
HKClassicCurrent focus
13 374-15 356 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS19255The current gene is the representative for this cluster.
PFAM architecturePAS_9 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0873177
Simplified PFAM architecture for HKOC_0873177
PFAM domain coverage: 277 / 660 aa (42.0%)
1 aa660 aa
PAS_9HisKAHATPase_c
- Simplified architecture: PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_9[290-385] | HisKA[404-474] | HATPase_c[521-630]
- Domain count: 3
- Matched identifier: HKOC_0873177
- Positioned domains: PAS_9 290-385 ; HisKA 404-474 ; HATPase_c 521-630
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS19255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key