1 Response_reg#1
4-115 aa · 112 aa · 44.8% of protein
Raw token
Response_reg:4:6.51e-24:115:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS16805
Response regulator, unclassified
Terrisporobacter mayombei · GCF_020748465
ClassRRTypeunclassifiedLength250 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS16805Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length250 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage186 / 250 aa (74.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa250 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
159-200 aa · 42 aa · 16.8% of protein
Raw token
HTH_AraC:159:0.0000038:200:42:423 HTH_AraC#3
214-245 aa · 32 aa · 12.8% of protein
Raw token
HTH_AraC:214:0.0000000252:245:32:42- Raw architecture: Response_reg:4:6.51e-24:115:114:111#HTH_AraC:159:0.0000038:200:42:42#HTH_AraC:214:0.0000000252:245:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000007.1::G00052
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8268-10771Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_16720RefSeq proteinWP_228106233.1
Context group ID
GCF_020748465::NZ_JAHZMP010000007.1::G00052Context members
K0039_RS16800K0039_RS16805
Partner locus tags
K0039_RS16800K0039_RS16805
Partner old locus tags
K0039_16715K0039_16720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228106233.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9PWZ2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9PWZ2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS16805Primary locus identifier stored in the genes table.
Old locus tagK0039_16720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000007.1Sequence record reported by the local genomic context database.
Genomic interval10 019-10 771 nt753 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 268-10 771 ntGCF_020748465::NZ_JAHZMP010000007.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000007.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000007.1All displayed genes belong to this local TCS context.
Neighborhood span8 268-10 771 nt2 504 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 268 nt10 771 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS16800GCF_020748465#K0039_RS16800
HKClassic
8 268-10 025 nt · Forward (+)
K0039_RS16805GCF_020748465#K0039_RS16805
RRunclassifiedCurrent focus
10 019-10 771 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS16805The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0726650
Simplified PFAM architecture for RROC_0726650
PFAM domain coverage: 178 / 250 aa (71.2%)
1 aa250 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-106] | HTH_18[173-247]
- Domain count: 2
- Matched identifier: RROC_0726650
- Positioned domains: Response_reg 4-106 ; HTH_18 173-247
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS16805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key