1 HisKA#1
391-459 aa · 69 aa · 10.7% of protein
Raw token
HisKA:391:0.00000000165:459:69:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS16575
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength644 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020748465#K0039_RS16575Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length644 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 644 aa (28.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa644 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
506-617 aa · 112 aa · 17.4% of protein
Raw token
HATPase_c:506:2.35e-28:617:112:109- Raw architecture: HisKA:391:0.00000000165:459:69:64#HATPase_c:506:2.35e-28:617:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020748465::NZ_JAHZMP010000006.1::G00051
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span151768-153702Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_16490RefSeq proteinWP_228106185.1
Context group ID
GCF_020748465::NZ_JAHZMP010000006.1::G00051Context members
K0039_RS16575
Partner locus tags
K0039_RS16575
Partner old locus tags
K0039_16490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228106185.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q7R7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q7R7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS16575Primary locus identifier stored in the genes table.
Old locus tagK0039_16490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000006.1Sequence record reported by the local genomic context database.
Genomic interval151 768-153 702 nt1 935 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span151 768-153 702 ntGCF_020748465::NZ_JAHZMP010000006.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000006.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000006.1All displayed genes belong to this local TCS context.
Neighborhood span151 768-153 702 nt1 935 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
151 768 nt153 702 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K0039_RS16575GCF_020748465#K0039_RS16575
HKClassicCurrent focus
151 768-153 702 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS16575The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0912026
Simplified PFAM architecture for HKOC_0912026
PFAM domain coverage: 178 / 644 aa (27.6%)
1 aa644 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[391-458] | HATPase_c[506-615]
- Domain count: 2
- Matched identifier: HKOC_0912026
- Positioned domains: HisKA 391-458 ; HATPase_c 506-615
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS16575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key