1 Response_reg#1
6-116 aa · 111 aa · 24.6% of protein
Raw token
Response_reg:6:1.93e-31:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS15675
Response regulator NtrC family
Terrisporobacter mayombei · GCF_020748465
ClassRRTypeNtrCLength452 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS15675Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
Response_regAAA_5HTH_8
Protein length452 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage269 / 452 aa (59.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 AAA_5,1 HTH_8Summary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa452 aa
Domain-by-domain annotation3 items
2 AAA_5#2
160-278 aa · 119 aa · 26.3% of protein
Raw token
AAA_5:160:0.0000000000397:278:131:1353 HTH_8#3
408-446 aa · 39 aa · 8.6% of protein
Raw token
HTH_8:408:0.0000000252:446:39:40- Raw architecture: Response_reg:6:1.93e-31:116:111:111#AAA_5:160:0.0000000000397:278:131:135#HTH_8:408:0.0000000252:446:39:40
- Domain description: 1 Response_reg,1 AAA_5,1 HTH_8
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000005.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span145279-148671Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_15580RefSeq proteinWP_228106013.1
Context group ID
GCF_020748465::NZ_JAHZMP010000005.1::G00048Context members
K0039_RS15675K0039_RS15680
Partner locus tags
K0039_RS15675K0039_RS15680
Partner old locus tags
K0039_15580K0039_15585
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228106013.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q769Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q769_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS15675Primary locus identifier stored in the genes table.
Old locus tagK0039_15580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000005.1Sequence record reported by the local genomic context database.
Genomic interval145 279-146 637 nt1 359 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span145 279-148 671 ntGCF_020748465::NZ_JAHZMP010000005.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000005.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000005.1All displayed genes belong to this local TCS context.
Neighborhood span145 279-148 671 nt3 393 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
145 279 nt148 671 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS15675GCF_020748465#K0039_RS15675
RRNtrCCurrent focus
145 279-146 637 nt · Reverse (-)
K0039_RS15680GCF_020748465#K0039_RS15680
HKClassic
146 638-148 671 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS15675The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Sigma54_activat + AAA_lid_14 + HTH_84 domains in the representative PFAM annotation.
PFAM architecture for RROC_0280344
Simplified PFAM architecture for RROC_0280344
PFAM domain coverage: 389 / 452 aa (86.1%)
1 aa452 aa
Response_regSigma54_activatAAA_lid_14HTH_8
- Simplified architecture: Response_reg + Sigma54_activat + AAA_lid_14 + HTH_8
- Raw architecture: Response_reg[6-115] | Sigma54_activat[140-304] | AAA_lid_14[309-383] | HTH_8[408-446]
- Domain count: 4
- Matched identifier: RROC_0280344
- Positioned domains: Response_reg 6-115 ; Sigma54_activat 140-304 ; AAA_lid_14 309-383 ; HTH_8 408-446
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS15675
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key