1 PAS_9#1
257-360 aa · 104 aa · 16.6% of protein
Raw token
PAS_9:257:0.0000125:360:108:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS13835
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength627 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020748465#K0039_RS13835Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_c
Protein length627 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage286 / 627 aa (45.6%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa627 aa
Domain-by-domain annotation3 items
2 HisKA#2
372-442 aa · 71 aa · 11.3% of protein
Raw token
HisKA:372:0.000000000000543:442:71:643 HATPase_c#3
489-599 aa · 111 aa · 17.7% of protein
Raw token
HATPase_c:489:3.55e-28:599:111:109- Raw architecture: PAS_9:257:0.0000125:360:108:102#HisKA:372:0.000000000000543:442:71:64#HATPase_c:489:3.55e-28:599:111:109
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020748465::NZ_JAHZMP010000004.1::G00047
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span40927-42810Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_13755RefSeq proteinWP_228105664.1
Context group ID
GCF_020748465::NZ_JAHZMP010000004.1::G00047Context members
K0039_RS13835
Partner locus tags
K0039_RS13835
Partner old locus tags
K0039_13755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228105664.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q2B7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q2B7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS13835Primary locus identifier stored in the genes table.
Old locus tagK0039_13755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000004.1Sequence record reported by the local genomic context database.
Genomic interval40 927-42 810 nt1 884 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span40 927-42 810 ntGCF_020748465::NZ_JAHZMP010000004.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000004.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000004.1All displayed genes belong to this local TCS context.
Neighborhood span40 927-42 810 nt1 884 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 927 nt42 810 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K0039_RS13835GCF_020748465#K0039_RS13835
HKClassicCurrent focus
40 927-42 810 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS13835The current gene is the representative for this cluster.
PFAM architecturePAS_9 + PAS_9 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0956415
Simplified PFAM architecture for HKOC_0956415
PFAM domain coverage: 358 / 627 aa (57.1%)
1 aa627 aa
PAS_9PAS_9HisKAHATPase_c
- Simplified architecture: PAS_9 + PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_9[159-231] | PAS_9[258-360] | HisKA[372-442] | HATPase_c[489-599]
- Domain count: 4
- Matched identifier: HKOC_0956415
- Positioned domains: PAS_9 159-231 ; PAS_9 258-360 ; HisKA 372-442 ; HATPase_c 489-599
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS13835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key