1 HAMP#1
236-299 aa · 64 aa · 11.9% of protein
Raw token
HAMP:236:0.0000235:299:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS13755
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength536 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS13755Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length536 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage223 / 536 aa (41.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa536 aa
Domain-by-domain annotation3 items
2 HisKA#2
316-382 aa · 67 aa · 12.5% of protein
Raw token
HisKA:316:0.0000000000000277:382:67:643 HATPase_c#3
429-520 aa · 92 aa · 17.2% of protein
Raw token
HATPase_c:429:0.0000000577:520:96:109- Raw architecture: HAMP:236:0.0000235:299:64:69#HisKA:316:0.0000000000000277:382:67:64#HATPase_c:429:0.0000000577:520:96:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000004.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23499-25803Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_13675RefSeq proteinWP_228105649.1
Context group ID
GCF_020748465::NZ_JAHZMP010000004.1::G00045Context members
K0039_RS13750K0039_RS13755
Partner locus tags
K0039_RS13750K0039_RS13755
Partner old locus tags
K0039_13670K0039_13675
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228105649.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q2A4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q2A4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS13755Primary locus identifier stored in the genes table.
Old locus tagK0039_13675Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000004.1Sequence record reported by the local genomic context database.
Genomic interval24 193-25 803 nt1 611 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span23 499-25 803 ntGCF_020748465::NZ_JAHZMP010000004.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000004.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000004.1All displayed genes belong to this local TCS context.
Neighborhood span23 499-25 803 nt2 305 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 499 nt25 803 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS13750GCF_020748465#K0039_RS13750
RROmpR
23 499-24 221 nt · Forward (+)
K0039_RS13755GCF_020748465#K0039_RS13755
HKClassicCurrent focus
24 193-25 803 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS13755The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1336224
Simplified PFAM architecture for HKOC_1336224
PFAM domain coverage: 159 / 536 aa (29.7%)
1 aa536 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[316-382] | HATPase_c[429-520]
- Domain count: 2
- Matched identifier: HKOC_1336224
- Positioned domains: HisKA 316-382 ; HATPase_c 429-520
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS13755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key