1 HisKA#1
146-211 aa · 66 aa · 17.5% of protein
Raw token
HisKA:146:0.000000000000193:211:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS12195
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength378 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS12195Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length378 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 378 aa (46.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa378 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
258-366 aa · 109 aa · 28.8% of protein
Raw token
HATPase_c:258:2.72e-23:366:110:109- Raw architecture: HisKA:146:0.000000000000193:211:66:64#HATPase_c:258:2.72e-23:366:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000003.1::G00043
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span316341-318156Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_12115RefSeq proteinWP_228105349.1
Context group ID
GCF_020748465::NZ_JAHZMP010000003.1::G00043Context members
K0039_RS12195K0039_RS12200
Partner locus tags
K0039_RS12195K0039_RS12200
Partner old locus tags
K0039_12115K0039_12120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228105349.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q775Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q775_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS12195Primary locus identifier stored in the genes table.
Old locus tagK0039_12115Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000003.1Sequence record reported by the local genomic context database.
Genomic interval316 341-317 477 nt1 137 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span316 341-318 156 ntGCF_020748465::NZ_JAHZMP010000003.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000003.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000003.1All displayed genes belong to this local TCS context.
Neighborhood span316 341-318 156 nt1 816 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
316 341 nt318 156 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS12195GCF_020748465#K0039_RS12195
HKClassicCurrent focus
316 341-317 477 nt · Reverse (-)
K0039_RS12200GCF_020748465#K0039_RS12200
RROmpR
317 467-318 156 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS12195The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2630082
Simplified PFAM architecture for HKOC_2630082
PFAM domain coverage: 214 / 378 aa (56.6%)
1 aa378 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[94-133] | HisKA[146-211] | HATPase_c[259-366]
- Domain count: 3
- Matched identifier: HKOC_2630082
- Positioned domains: HAMP 94-133 ; HisKA 146-211 ; HATPase_c 259-366
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS12195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key