1 HisKA#1
51-105 aa · 55 aa · 20.6% of protein
Raw token
HisKA:51:0.000000457:105:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS12165
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength267 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS12165Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length267 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 267 aa (62.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa267 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
151-262 aa · 112 aa · 41.9% of protein
Raw token
HATPase_c:151:1.44e-23:262:112:109- Raw architecture: HisKA:51:0.000000457:105:61:64#HATPase_c:151:1.44e-23:262:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000003.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span307547-309228Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_12085RefSeq proteinWP_331476749.1
Context group ID
GCF_020748465::NZ_JAHZMP010000003.1::G00042Context members
K0039_RS12165K0039_RS12170
Partner locus tags
K0039_RS12165K0039_RS12170
Partner old locus tags
K0039_12085K0039_12090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_331476749.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS12165Primary locus identifier stored in the genes table.
Old locus tagK0039_12085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000003.1Sequence record reported by the local genomic context database.
Genomic interval307 547-308 350 nt804 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span307 547-309 228 ntGCF_020748465::NZ_JAHZMP010000003.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000003.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000003.1All displayed genes belong to this local TCS context.
Neighborhood span307 547-309 228 nt1 682 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
307 547 nt309 228 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS12165GCF_020748465#K0039_RS12165
HKClassicCurrent focus
307 547-308 350 nt · Reverse (-)
K0039_RS12170GCF_020748465#K0039_RS12170
RROmpR
308 557-309 228 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS12165The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2909391
Simplified PFAM architecture for HKOC_2909391
PFAM domain coverage: 111 / 267 aa (41.6%)
1 aa267 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[151-261]
- Domain count: 1
- Matched identifier: HKOC_2909391
- Positioned domains: HATPase_c 151-261
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS12165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key