1 PAS_4#1
120-228 aa · 109 aa · 17.7% of protein
Raw token
PAS_4:120:0.00000000000000935:228:109:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS11840
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength615 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020748465#K0039_RS11840Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
PAS_4HisKAHATPase_c
Protein length615 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage393 / 615 aa (63.9%)Merged over positioned domains only.
Domain description2 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa615 aa
Domain-by-domain annotation4 items
2 PAS_4#2
245-349 aa · 105 aa · 17.1% of protein
Raw token
PAS_4:245:0.000000478:349:111:1103 HisKA#3
359-429 aa · 71 aa · 11.5% of protein
Raw token
HisKA:359:0.000000000000074:429:71:644 HATPase_c#4
476-583 aa · 108 aa · 17.6% of protein
Raw token
HATPase_c:476:7.12e-28:583:109:109- Raw architecture: PAS_4:120:0.00000000000000935:228:109:110#PAS_4:245:0.000000478:349:111:110#HisKA:359:0.000000000000074:429:71:64#HATPase_c:476:7.12e-28:583:109:109
- Domain description: 2 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020748465::NZ_JAHZMP010000003.1::G00041
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span239656-241503Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_11760RefSeq proteinWP_228105281.1
Context group ID
GCF_020748465::NZ_JAHZMP010000003.1::G00041Context members
K0039_RS11840
Partner locus tags
K0039_RS11840
Partner old locus tags
K0039_11760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228105281.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q4P5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q4P5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS11840Primary locus identifier stored in the genes table.
Old locus tagK0039_11760Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000003.1Sequence record reported by the local genomic context database.
Genomic interval239 656-241 503 nt1 848 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span239 656-241 503 ntGCF_020748465::NZ_JAHZMP010000003.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000003.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000003.1All displayed genes belong to this local TCS context.
Neighborhood span239 656-241 503 nt1 848 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
239 656 nt241 503 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K0039_RS11840GCF_020748465#K0039_RS11840
HKClassicCurrent focus
239 656-241 503 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS11840The current gene is the representative for this cluster.
PFAM architecturePAS_4 + PAS_8 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0990009
Simplified PFAM architecture for HKOC_0990009
PFAM domain coverage: 338 / 615 aa (55.0%)
1 aa615 aa
PAS_4PAS_8HisKAHATPase_c
- Simplified architecture: PAS_4 + PAS_8 + HisKA + HATPase_c
- Raw architecture: PAS_4[120-227] | PAS_8[239-290] | HisKA[359-429] | HATPase_c[477-583]
- Domain count: 4
- Matched identifier: HKOC_0990009
- Positioned domains: PAS_4 120-227 ; PAS_8 239-290 ; HisKA 359-429 ; HATPase_c 477-583
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS11840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key