1 HisKA#1
839-903 aa · 65 aa · 6.1% of protein
Raw token
HisKA:839:0.00000000000269:903:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS11360
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength1060 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020748465#K0039_RS11360Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length1060 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 1060 aa (16.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1060 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
950-1060 aa · 111 aa · 10.5% of protein
Raw token
HATPase_c:950:5.05e-30:1060:111:109- Raw architecture: HisKA:839:0.00000000000269:903:66:64#HATPase_c:950:5.05e-30:1060:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020748465::NZ_JAHZMP010000003.1::G00039
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span146919-150101Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_11295RefSeq proteinWP_228105188.1
Context group ID
GCF_020748465::NZ_JAHZMP010000003.1::G00039Context members
K0039_RS11360
Partner locus tags
K0039_RS11360
Partner old locus tags
K0039_11295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228105188.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q7Q0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q7Q0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS11360Primary locus identifier stored in the genes table.
Old locus tagK0039_11295Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000003.1Sequence record reported by the local genomic context database.
Genomic interval146 919-150 101 nt3 183 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span146 919-150 101 ntGCF_020748465::NZ_JAHZMP010000003.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000003.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000003.1All displayed genes belong to this local TCS context.
Neighborhood span146 919-150 101 nt3 183 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
146 919 nt150 101 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
K0039_RS11360GCF_020748465#K0039_RS11360
HKClassicCurrent focus
146 919-150 101 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS11360The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c12 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0252801
Simplified PFAM architecture for HKOC_0252801
PFAM domain coverage: 435 / 1060 aa (41.0%)
1 aa1060 aa
Reg_propReg_propReg_propReg_propReg_propReg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_c
- Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c
- Raw architecture: Reg_prop[43-61] | Reg_prop[84-105] | Reg_prop[174-195] | Reg_prop[267-288] | Reg_prop[313-334] | Reg_prop[358-380] | Reg_prop[447-469] | Reg_prop[547-566] | Reg_prop[586-609] | Y_Y_Y[708-770] | HisKA[839-903] | HATPase_c[950-1059]
- Domain count: 12
- Matched identifier: HKOC_0252801
- Positioned domains: Reg_prop 43-61 ; Reg_prop 84-105 ; Reg_prop 174-195 ; Reg_prop 267-288 ; Reg_prop 313-334 ; Reg_prop 358-380 ; Reg_prop 447-469 ; Reg_prop 547-566 ; Reg_prop 586-609 ; Y_Y_Y 708-770 ; HisKA 839-903 ; HATPase_c 950-1059
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS11360
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key