1 His_kinase#1
205-283 aa · 79 aa · 19.8% of protein
Raw token
His_kinase:205:7.73e-32:283:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
K0039_RS11070
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_020748465
ClassHKTypeClassicLength398 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020748465#K0039_RS11070Stable P2CS identifier used across views.
GenomeGCF_020748465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length398 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 398 aa (46.0%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa398 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
293-396 aa · 104 aa · 26.1% of protein
Raw token
HATPase_c:293:0.000000049:396:114:109- Raw architecture: His_kinase:205:7.73e-32:283:80:80#HATPase_c:293:0.000000049:396:114:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020748465::NZ_JAHZMP010000003.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span73998-75926Genomic interval covered by the local TCS group.
Identifiers
Old locus tagK0039_11010RefSeq proteinWP_228105134.1
Context group ID
GCF_020748465::NZ_JAHZMP010000003.1::G00035Context members
K0039_RS11065K0039_RS11070
Partner locus tags
K0039_RS11065K0039_RS11070
Partner old locus tags
K0039_11005K0039_11010
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228105134.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q568Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q568_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagK0039_RS11070Primary locus identifier stored in the genes table.
Old locus tagK0039_11010Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHZMP010000003.1Sequence record reported by the local genomic context database.
Genomic interval74 730-75 926 nt1 197 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span73 998-75 926 ntGCF_020748465::NZ_JAHZMP010000003.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020748465::NZ_JAHZMP010000003.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHZMP010000003.1All displayed genes belong to this local TCS context.
Neighborhood span73 998-75 926 nt1 929 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 998 nt75 926 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
K0039_RS11065GCF_020748465#K0039_RS11065
RRLytTR
73 998-74 726 nt · Reverse (-)
K0039_RS11070GCF_020748465#K0039_RS11070
HKClassicCurrent focus
74 730-75 926 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS11070The current gene is the representative for this cluster.
PFAM architecture5TM-5TMR_LYT + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2464147
Simplified PFAM architecture for HKOC_2464147
PFAM domain coverage: 340 / 398 aa (85.4%)
1 aa398 aa
5TM-5TMR_LYTHis_kinaseHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + His_kinase + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[27-190] | His_kinase[205-283] | HATPase_c[298-394]
- Domain count: 3
- Matched identifier: HKOC_2464147
- Positioned domains: 5TM-5TMR_LYT 27-190 ; His_kinase 205-283 ; HATPase_c 298-394
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS11070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_020748465
AssemblyASM2074846v1 · Contighaploid
Genome composition4 159 601 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 94 · HK 49 · RR 44CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key